BnTIR: an online transcriptome platform for exploring RNA-seq libraries for oil crop Brassica napus

被引：83
|
作者：
Liu, Dongxu [1 ,2 ,3 ]
Yu, Liangqian [1 ,3 ]
Wei, Lulu [2 ,3 ]
Yu, Pugang [1 ,3 ]
Wang, Jing [2 ,3 ]
Zhao, Hu [1 ,3 ]
Zhang, Yuting [1 ,3 ]
Zhang, Shuntai [4 ]
Yang, Zhiquan [2 ,3 ]
Chen, Guanqun [5 ]
Yao, Xuan [2 ,3 ]
Yang, Yanjun [4 ]
Zhou, Yongming [1 ]
Wang, Xuemin [6 ,7 ]
Lu, Shaoping [1 ,3 ]
Dai, Cheng [1 ,3 ]
Yang, Qing-Yong [1 ,2 ,3 ]
Guo, Liang [1 ,3 ]
机构：
[1] Huazhong Agr Univ, Natl Key Lab Crop Genet Improvement, Wuhan, Peoples R China
[2] Huazhong Agr Univ, Coll Informat, Hubei Key Lab Agr Bioinformat, Wuhan, Peoples R China
[3] Hubei Hongshan Lab, Wuhan, Peoples R China
[4] Huazhong Agr Univ, Coll Humanities & Social Sci, Wuhan, Peoples R China
[5] Univ Alberta, Dept Agr Food & Nutr Sci, Edmonton, AB, Canada
[6] Univ Missouri, Dept Biol, St Louis, MO 63121 USA
[7] Donald Danforth Plant Sci Ctr, St Louis, MO USA
来源：
PLANT BIOTECHNOLOGY JOURNAL | 2021年 / 19卷 / 10期
关键词：
Brassica napus; transcriptome; Co-expression; database; DATABASE;
D O I：
10.1111/pbi.13665
中图分类号：
Q81 [生物工程学（生物技术）]; Q93 [微生物学];
学科分类号：
071005 ; 0836 ; 090102 ; 100705 ;
摘要：
[No abstract available]
引用
收藏
页码：1895 / 1897
页数：3
相关论文
共 50 条
  • [31] Use of mRNA-seq to discriminate contributions to the transcriptome from the constituent genomes of the polyploid crop species Brassica napus
    Janet Higgins
    Andreas Magusin
    Martin Trick
    Fiona Fraser
    Ian Bancroft
    BMC Genomics, 13
  • [32] Use of mRNA-seq to discriminate contributions to the transcriptome from the constituent genomes of the polyploid crop species Brassica napus
    Higgins, Janet
    Magusin, Andreas
    Trick, Martin
    Fraser, Fiona
    Bancroft, Ian
    BMC GENOMICS, 2012, 13
  • [33] Genome-wide association and RNA-seq analyses identify loci for pod orientation in rapeseed (Brassica napus)
    Yang, Yuting
    Wang, Wenxiang
    Hu, Qiong
    Raman, Harsh
    Liu, Jia
    FRONTIERS IN PLANT SCIENCE, 2023, 13
  • [34] RNA-seq datasets of field rapeseed (Brassica napus) cultures conditioned by Elice16Indures® biostimulator
    Decsi, Kincso
    Hegedus, Geza
    Kutasy, Barbara
    Virag, Eszter
    DATA IN BRIEF, 2022, 45
  • [35] RNA-seq datasets of field rapeseed (Brassica napus) cultures conditioned by Elice16Indures® biostimulator
    Decsi, Kincso
    Hegedus, Geza
    Kutasy, Barbara
    Virag, Eszter
    DATA IN BRIEF, 2022, 45
  • [36] Assignment of unanchored scaffolds in genome of Brassica napus by RNA-seq analysis in a complete set of Brassica rapa-Brassica oleracea monosomic addition lines
    Huo Dong-ao
    Zhu Bin
    Tian Gui-fu
    Du Xu-ye
    Guo Juan
    Cai Meng-xian
    JOURNAL OF INTEGRATIVE AGRICULTURE, 2019, 18 (07) : 1541 - 1546
  • [37] aTAP: automated transcriptome analysis platform for processing RNA-seq data by de novo assembly
    Surachat, Komwit
    Taylor, Todd Duane
    Wattanamatiphot, Wanicbut
    Sukpisit, Sukgamon
    Jeenkeawpiam, Kongpop
    HELIYON, 2022, 8 (08)
  • [38] Assignment of unanchored scaffolds in genome of Brassica napus by RNA-seq analysis in a complete set of Brassica rapa-Brassica oleracea monosomic addition lines
    HUO Dong-ao
    ZHU Bin
    TIAN Gui-fu
    DU Xu-ye
    GUO Juan
    CAI Meng-xian
    JournalofIntegrativeAgriculture, 2019, 18 (07) : 1541 - 1546
  • [39] Exploring the genetic potential of Pakistani soybean cultivars through RNA-seq based transcriptome analysis
    Tariq, Arslan
    Jabeen, Zahra
    Farrakh, Sumaira
    Noreen, Kiran
    Arshad, Waleed
    Ahmed, Haroon
    Haider, Waseem
    MOLECULAR BIOLOGY REPORTS, 2022, 49 (04) : 2889 - 2897
  • [40] Exploring the genetic potential of Pakistani soybean cultivars through RNA-seq based transcriptome analysis
    Arslan Tariq
    Zahra Jabeen
    Sumaira Farrakh
    Kiran Noreen
    Waleed Arshad
    Haroon Ahmed
    Waseem Haider
    Molecular Biology Reports, 2022, 49 : 2889 - 2897
12345