Single-Molecule Observation of the Photoregulated Conformational Dynamics of DNA Origami Nanoscissors

被引:47
|
作者
Willner, Elena M. [3 ,4 ]
Kamada, Yuu [2 ]
Suzuki, Yuki [2 ,5 ]
Emura, Tomoko [2 ]
Hidaka, Kumi [2 ]
Dietz, Hendrik [3 ,4 ]
Sugiyama, Hiroshi [1 ,2 ]
Endo, Masayuki [1 ,2 ]
机构
[1] Kyoto Univ, Inst Integrated Cell Mat Sci, Sakyo Ku, Yoshida Ushinomiyacho, Kyoto 6068501, Japan
[2] Kyoto Univ, Dept Chem, Grad Sch Sci, Sakyo Ku, Kitashirakawa Oiwakecho, Kyoto 6068502, Japan
[3] Tech Univ Munich, Phys Dept, Coulombwall 4a, D-85748 Garching, Germany
[4] Tech Univ Munich, Inst Adv Study, Coulombwall 4a, D-85748 Garching, Germany
[5] Tohoku Univ, Frontier Res Inst Interdisciplinary Sci, Aoba Ku, Aramaki Aza Aoba 6-3, Sendai, Miyagi 9808578, Japan
关键词
DNA origami; nanostructures; photoswitches; self-assembly; single-molecule studies; ATOMIC-FORCE MICROSCOPY; NANOSTRUCTURES; HYBRIDIZATION; DEVICES; MOVEMENT; SYSTEM; MOTION;
D O I
10.1002/anie.201708722
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
We demonstrate direct observation of the dynamic opening and closing behavior of photocontrollable DNA origami nanoscissors using high-speed atomic force microscopy (HS-AFM). First the conformational change between the open and closed state controlled by adjustment of surrounding salt concentration could be directly observed during AFM scanning. Then light-responsive moieties were incorporated into the nanoscissors to control these structural changes by photoirradiation. Using photoswitchable DNA strands, we created a photoresponsive nanoscissors variant and were able to distinguish between the open and closed conformations after respective irradiation with ultraviolet (UV) and visible (Vis) light by gel electrophoresis and AFM imaging. Additionally, these reversible changes in shape during photoirradiation were directly visualized using HS-AFM. Moreover, four photoswitchable nanoscissors were assembled into a scissor-actuator-like higher-order object, the configuration of which could be controlled by the open and closed switching induced by irradiation with UV and Vis light.
引用
收藏
页码:15324 / 15328
页数:5
相关论文
共 50 条
  • [41] Correlative Single-Molecule Force-FRET Measurements of DNA Hairpin Conformational Dynamics
    Yazdi, Nastaran Hadizadeh
    Cabanas-Danes, Jordi
    Rahmanseresht, Sheema
    Mukhortava, Ann
    Driessen, Rosalie P. C.
    Raja, Ali
    BIOPHYSICAL JOURNAL, 2021, 120 (03) : 220A - 220A
  • [42] DNA origami as biocompatible surface to match single-molecule and ensemble experiments
    Gietl, Andreas
    Holzmeister, Phil
    Grohmann, Dina
    Tinnefeld, Philip
    NUCLEIC ACIDS RESEARCH, 2012, 40 (14)
  • [43] Single-Molecule FRET Ruler Based on Rigid DNA Origami Blocks
    Stein, Ingo H.
    Schueller, Verena
    Boehm, Philip
    Tinnefeld, Philip
    Liedl, Tim
    CHEMPHYSCHEM, 2011, 12 (03) : 689 - 695
  • [44] Quantitative Single-Molecule Measurements of Membrane Charges with DNA Origami Sensors
    Ochmann, Sarah E.
    Schroeder, Tim
    Schulz, Clara M.
    Tinnefeld, Philip
    ANALYTICAL CHEMISTRY, 2022, 94 (05) : 2633 - 2640
  • [45] DNA Origami Assembled Nanoantennas for Manipulating Single-Molecule Spectral Emission
    Sanz-Paz, Maria
    Zhu, Fangjia
    Bruder, Nicolas
    Kolataj, Karol
    Fernandez-Dominguez, Antonio I.
    Acuna, Guillermo P.
    NANO LETTERS, 2023, 23 (13) : 6202 - 6208
  • [46] Monitoring patterned enzymatic polymerization on DNA origami at single-molecule level
    Okholm, A. H.
    Aslan, H.
    Besenbacher, F.
    Dong, M.
    Kjems, J.
    NANOSCALE, 2015, 7 (25) : 10970 - 10973
  • [47] DNA Origami Voltage Sensors for Transmembrane Potentials with Single-Molecule Sensitivity
    Ochmann, Sarah E.
    Joshi, Himanshu
    Bueber, Ece
    Franquelim, Henri G.
    Stegemann, Pierre
    Sacca, Barbara
    Keyser, Ulrich F.
    Aksimentiev, Aleksei
    Tinnefeld, Philip
    NANO LETTERS, 2021, 21 (20) : 8634 - 8641
  • [48] DNA Origami Vesicle Sensors with Triggered Single-Molecule Cargo Transfer
    Bueber, Ece
    Yaadav, Renukka
    Schroeder, Tim
    Franquelim, Henri G.
    Tinnefeld, Philip
    ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2024, 63 (49)
  • [49] Reversible Reconfiguration of DNA Origami Nanochambers Monitored by Single-Molecule FRET
    Sacca, Barbara
    Ishitsuka, Yuji
    Meyer, Rebecca
    Sprengel, Andreas
    Schoeneweiss, Elisa-Charlott
    Nienhaus, G. Ulrich
    Niemeyer, Christof M.
    ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2015, 54 (12) : 3592 - 3597
  • [50] Single-molecule photon-fueled DNA nanoscissors for DNA cleavage based on the regulation of substrate binding affinity by azobenzene
    Zou, Yuan
    Chen, Jie
    Zhu, Zhi
    Lu, Lianyu
    Huang, Yishun
    Song, Yanling
    Zhang, Huimin
    Kang, Huaizhi
    Yang, Chaoyong James
    CHEMICAL COMMUNICATIONS, 2013, 49 (77) : 8716 - 8718