Single-Molecule Observation of the Photoregulated Conformational Dynamics of DNA Origami Nanoscissors

被引:47
|
作者
Willner, Elena M. [3 ,4 ]
Kamada, Yuu [2 ]
Suzuki, Yuki [2 ,5 ]
Emura, Tomoko [2 ]
Hidaka, Kumi [2 ]
Dietz, Hendrik [3 ,4 ]
Sugiyama, Hiroshi [1 ,2 ]
Endo, Masayuki [1 ,2 ]
机构
[1] Kyoto Univ, Inst Integrated Cell Mat Sci, Sakyo Ku, Yoshida Ushinomiyacho, Kyoto 6068501, Japan
[2] Kyoto Univ, Dept Chem, Grad Sch Sci, Sakyo Ku, Kitashirakawa Oiwakecho, Kyoto 6068502, Japan
[3] Tech Univ Munich, Phys Dept, Coulombwall 4a, D-85748 Garching, Germany
[4] Tech Univ Munich, Inst Adv Study, Coulombwall 4a, D-85748 Garching, Germany
[5] Tohoku Univ, Frontier Res Inst Interdisciplinary Sci, Aoba Ku, Aramaki Aza Aoba 6-3, Sendai, Miyagi 9808578, Japan
关键词
DNA origami; nanostructures; photoswitches; self-assembly; single-molecule studies; ATOMIC-FORCE MICROSCOPY; NANOSTRUCTURES; HYBRIDIZATION; DEVICES; MOVEMENT; SYSTEM; MOTION;
D O I
10.1002/anie.201708722
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
We demonstrate direct observation of the dynamic opening and closing behavior of photocontrollable DNA origami nanoscissors using high-speed atomic force microscopy (HS-AFM). First the conformational change between the open and closed state controlled by adjustment of surrounding salt concentration could be directly observed during AFM scanning. Then light-responsive moieties were incorporated into the nanoscissors to control these structural changes by photoirradiation. Using photoswitchable DNA strands, we created a photoresponsive nanoscissors variant and were able to distinguish between the open and closed conformations after respective irradiation with ultraviolet (UV) and visible (Vis) light by gel electrophoresis and AFM imaging. Additionally, these reversible changes in shape during photoirradiation were directly visualized using HS-AFM. Moreover, four photoswitchable nanoscissors were assembled into a scissor-actuator-like higher-order object, the configuration of which could be controlled by the open and closed switching induced by irradiation with UV and Vis light.
引用
收藏
页码:15324 / 15328
页数:5
相关论文
共 50 条
  • [31] The dynamics of single-molecule DNA in flow
    Shaqfeh, ESG
    JOURNAL OF NON-NEWTONIAN FLUID MECHANICS, 2005, 130 (01) : 1 - 28
  • [32] Single-molecule conformational dynamics of fluctuating noncovalent DNA - Protein interactions a in DNA damage recognition
    Lu, HP
    Iakoucheva, LM
    Ackerman, EJ
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2001, 123 (37) : 9184 - 9185
  • [33] Single-Molecule Observation of Ligand Binding and Conformational Changes in FeuA
    de Boer, Marijn
    Gouridis, Giorgos
    Muthahari, Yusran Abdillah
    Cordes, Thorben
    BIOPHYSICAL JOURNAL, 2019, 117 (09) : 1642 - 1654
  • [34] Single-molecule FRET studies of protein conformational dynamics
    Yang, Haw
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2012, 243
  • [35] Single-Molecule Protein Conformational Dynamics in Enzymatic Reactions
    Lu, H. Peter
    SINGLE MOLECULE SPECTROSCOPY IN CHEMISTRY, PHYSICS AND BIOLOGY, 2010, 96 : 471 - +
  • [36] Single-molecule conformational dynamics of G-quadruplex
    Okumus, B
    Lee, J
    Kim, D
    Ha, T
    BIOPHYSICAL JOURNAL, 2005, 88 (01) : 348A - 349A
  • [37] Kinetics and Statistical Distributions of Single-Molecule Conformational Dynamics
    Lu, Qiang
    Wang, Jin
    JOURNAL OF PHYSICAL CHEMISTRY B, 2009, 113 (05): : 1517 - 1521
  • [38] Single-molecule analysis of ferritin conformational dynamics and kinetics
    Yousefi, Arman
    Zargarbashi, Saaman
    Hickman, Graham J.
    Assadipapari, Mahya
    Zheng, Ze
    Sanderson, Gabriel
    Parmenter, Christopher D. J.
    Xu, Lei
    Rahmani, Mohsen
    Ying, Cuifeng
    BIOPHYSICAL JOURNAL, 2024, 123 (03) : 287A - 287A
  • [39] Sizing up single-molecule enzymatic conformational dynamics
    Lu, H. Peter
    CHEMICAL SOCIETY REVIEWS, 2014, 43 (04) : 1118 - 1143
  • [40] Correlative single-molecule force-FRET measurements of DNA hairpin conformational dynamics
    Llauro-Portell, Aida
    Mukhortava, Ann
    Hendriks, Maurice
    Rauch, Philipp
    EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, 2021, 50 (SUPPL 1): : 141 - 141