A structural explanation for the twilight zone of protein sequence homology

被引:101
|
作者
Chung, SY
Subbiah, S
机构
[1] UNIFORMED SERV UNIV HLTH SCI,DEPT BIOCHEM,BETHESDA,MD 20814
[2] STANFORD UNIV,SCH MED,DEPT BIOL STRUCT,STANFORD,CA 94305
关键词
D O I
10.1016/S0969-2126(96)00119-0
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Homology modeling of protein structures as a function of sequence breaks down at the twilight zone limit of sequence identity between the template and target proteins. Our results suggest that protein sequences that have diverged from a common ancestor beyond the twilight zone may adopt side chain interactions that are very different from those endowed by the ancestral sequence.
引用
收藏
页码:1123 / 1127
页数:5
相关论文
共 50 条
  • [41] The Twilight Zone
    HOFFERT, B. A. R. B. A. R. A.
    LIBRARY JOURNAL, 2021, 146 (12) : 22 - 22
  • [42] Modular prediction of protein structural classes from sequences of twilight-zone identity with predicting sequences
    Mizianty, Marcin J.
    Kurgan, Lukasz
    BMC BIOINFORMATICS, 2009, 10
  • [43] Modular prediction of protein structural classes from sequences of twilight-zone identity with predicting sequences
    Marcin J Mizianty
    Lukasz Kurgan
    BMC Bioinformatics, 10
  • [44] SCPRED: Accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences
    Kurgan, Lukasz
    Cios, Krzysztof
    Chen, Ke
    BMC BIOINFORMATICS, 2008, 9 (1)
  • [45] In the cinematic zone of The Twilight Zone
    Telotte, J. P.
    SCIENCE FICTION FILM AND TELEVISION, 2010, 3 (01) : 1 - 17
  • [46] Sequence homology and structural analysis of the clostridial neurotoxins
    Lacy, DB
    Stevens, RC
    JOURNAL OF MOLECULAR BIOLOGY, 1999, 291 (05) : 1091 - 1104
  • [47] THE STRUCTURAL AND SEQUENCE HOMOLOGY OF A FAMILY OF MICROBIAL RIBONUCLEASES
    HILL, C
    DODSON, G
    HEINEMANN, U
    SAENGER, W
    MITSUI, Y
    NAKAMURA, K
    BORISOV, S
    TISCHENKO, G
    POLYAKOV, K
    PAVLOVSKY, S
    TRENDS IN BIOCHEMICAL SCIENCES, 1983, 8 (10) : 364 - 369
  • [48] Fine-tuning structural RNA alignments in the twilight zone
    Andreas Bremges
    Stefanie Schirmer
    Robert Giegerich
    BMC Bioinformatics, 11
  • [49] Fine-tuning structural RNA alignments in the twilight zone
    Bremges, Andreas
    Schirmer, Stefanie
    Giegerich, Robert
    BMC BIOINFORMATICS, 2010, 11
  • [50] SMURFLite: combining simplified Markov random fields with simulated evolution improves remote homology detection for beta-structural proteins into the twilight zone
    Daniels, Noah M.
    Hosur, Raghavendra
    Berger, Bonnie
    Cowen, Lenore J.
    BIOINFORMATICS, 2012, 28 (09) : 1216 - 1222