Fragment molecular orbital method: use of approximate electrostatic potential

被引:363
|
作者
Nakano, T
Kaminuma, T
Sato, T
Fukuzawa, K
Akiyama, Y
Uebayasi, M
Kitaura, K
机构
[1] Natl Inst Hlth Sci, Div ChemBio Informat, Setagaya Ku, Tokyo 1588501, Japan
[2] Fuji Res Inst Corp, Ctr Computat Sci & Engn, Chiyoda Ku, Tokyo 1018443, Japan
[3] Natl Inst Adv Ind Sci & Technol, Computat Biol Res Ctr, Koto Ku, Tokyo 1350064, Japan
[4] Natl Inst Adv Ind Sci & Technol, Inst Mol & Cell Biol, Tsukuba, Ibaraki 3058566, Japan
[5] Natl Inst Adv Ind Sci & Technol, Res Inst Computat Sci, Tsukuba, Ibaraki 3058568, Japan
关键词
D O I
10.1016/S0009-2614(01)01416-6
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Recently, we have proposed the fragment molecular orbital (FMO) method. an approximate MO method for calculating large molecules such as proteins. The method has been shown to reproduce ab initio total energies and geometries of molecules in good accuracy. The most time consuming part in the method, the calculations of environmental electrostatic potentials, were speeded up by employing the Mulliken approximation for two-electron integrals and a fractional point charge approximation. Numerical calculations on several polypeptides revealed that the approximations brought no significant loss of accuracy in the total energy of molecules and were of practical use. (C) 2002 Elsevier Science B.V. All rights reserved.
引用
收藏
页码:475 / 480
页数:6
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