Comparison of PNA probe-based real-time PCR and Cobas TaqMan MTB for detection of MTBC

被引:10
|
作者
Kim, Jae Woo [1 ]
Choi, Young Jin [2 ]
Kim, Hwi Jun [2 ]
Park, Joon Soo [3 ]
Nam, Hae Seon [4 ]
Hwangbo, Young [5 ]
Kim, Doug Uk [6 ]
Park, Kwi Sung [6 ]
机构
[1] Soonchunhyang Univ, Coll Med, Dept Emergency Med, Cheonan 330090, South Korea
[2] Soonchunhyang Univ, Coll Med, Dept Lab Med, Cheonan 330090, South Korea
[3] Soonchunhyang Univ, Coll Med, Dept Pediat, Cheonan 330090, South Korea
[4] Soonchunhyang Univ, Coll Med, Dept Parasitol, Cheonan 330090, South Korea
[5] Soonchunhyang Univ, Coll Med, Dept Prevent Med, Cheonan 330090, South Korea
[6] Chungcheongnam Do Hlth & Environm Res Inst, Taejon 300801, South Korea
关键词
Peptide nucleic acids; PCR; Mycobacterium tuberculosis complex; Tuberculosis; Real-time PCR; MYCOBACTERIUM-TUBERCULOSIS COMPLEX; DIAGNOSIS; TESTS;
D O I
10.1007/s13206-013-7201-0
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
We compared the sensitivities and specificities of peptide nucleic acid (PNA) probe-based real-time PCR (PNAqPCR (TM) TB/NTM) and Cobas TaqMan MTB assays for detection of Mycobacterium tuberculosis complex (MTBC) in clinical specimens. A total of 425 clinical specimens including 360 respiratory specimens and 65 non-respiratory specimens were evaluated for comparative analysis. In respiratory specimens, the sensitivity of TaqMan MTB and PNAqPCR assay for detection of MTBC was 82.9% and 91.5%, respectively. In non-respiratory specimens, the sensitivity of the TaqMan MTB and PNAqPCR assay was 23.1% and 76.9%, respectively. Overall, the sensitivity and specificity of the TaqMan MTB assay for detection of MTBC was 76.9% and 100%, respectively. The PNAqPCR assay had a sensitivity and specificity of 90% and 99.7%, respectively.
引用
收藏
页码:85 / 88
页数:4
相关论文
共 50 条
  • [31] Comparison of two real-time PCR based assays (realtime HCV, COBAS TaqMan) with a signal amplification assay (bDNA) for HCV RNA detection
    Vermehren, Johannes
    Wohnsland, Anette
    Gaertner, Barbara
    Otto, Annegret
    Goebel, Reinhild
    Zeuzem, Stefan
    Sarrazin, Christoph
    HEPATOLOGY, 2007, 46 (04) : 845A - 845A
  • [32] Quantitative detection method of Enterocytozoon hepatopenaei using TaqMan probe real-time PCR
    Liu, Ya-Mei
    Qiu, Liang
    Sheng, An-Zhi
    Wan, Xiao-Yuan
    Cheng, Dong-Yuan
    Huang, Jie
    JOURNAL OF INVERTEBRATE PATHOLOGY, 2018, 151 : 191 - 196
  • [33] Detection and quantitation of bluetongue virus serotypes by a TaqMan probe-based real-time RT-PCR and differentiation from epizootic hemorrhagic disease virus
    Yin, Hui-qiong
    Zhang, Hong
    Shi, Li-jun
    Yang, Shu
    Zhang, Gai-ping
    Wang, Sheng-qi
    Zhang, Jin-gang
    JOURNAL OF VIROLOGICAL METHODS, 2010, 168 (1-2) : 237 - 241
  • [34] Development of a real-time probe-based PCR assay for the diagnosis of Pneumocystis pneumonia
    Strutt, M
    Smith, M
    MEDICAL MYCOLOGY, 2005, 43 (04) : 343 - 347
  • [35] Evaluation of absolute quantitation by nonlinear regression in probe-based real-time PCR
    Rasmus Goll
    Trine Olsen
    Guanglin Cui
    Jon Florholmen
    BMC Bioinformatics, 7
  • [36] A probe-based real-time PCR assay for the detection of Neospora caninum in clinical samples from cattle
    Barry, Rhiannon
    Nissly, Ruth H.
    Feria, Willard
    Thirumalapura, Nagaraja
    Tewari, Deepanker
    Jayarao, Bhushan M.
    Kuchipudi, Suresh, V
    VETERINARY PARASITOLOGY, 2019, 269 : 2 - 6
  • [37] Evaluation of absolute quantitation by nonlinear regression in probe-based real-time PCR
    Goll, R
    Olsen, T
    Cui, GL
    Florholmen, J
    BMC BIOINFORMATICS, 2006, 7 (1)
  • [38] Real-time hydrolysis probe-based detection of toxigenic Clostridium difficile
    Luna, RA
    Li, SY
    Jones, SC
    Huang, YH
    Versalovic, J
    JOURNAL OF MOLECULAR DIAGNOSTICS, 2004, 6 (04): : 422 - 422
  • [39] Comparison of AdvanSure TB/NTM PCR and COBAS TaqMan MTB PCR for Detection of Mycobacterium tuberculosis Complex in Routine Clinical Practice
    Cho, Won-Hyung
    Won, Eun-Jeong
    Choi, Hyun-Jung
    Kee, Seung-Jung
    Shin, Jong-Hee
    Ryang, Dong-Wook
    Suh, Soon-Pal
    ANNALS OF LABORATORY MEDICINE, 2015, 35 (03) : 356 - 361
  • [40] Performance of the Cobas AmpliPrep/Cobas TaqMan real-time PCR assay for hepatitis B virus DNA quantification
    Chevaliez, Stephane
    Bouvier-Alias, Magali
    Laperche, Syria
    Pawlotsky, Jean-Michel
    JOURNAL OF CLINICAL MICROBIOLOGY, 2008, 46 (05) : 1716 - 1723