3DPatch: fast 3D structure visualization with residue conservation

被引:3
|
作者
Jakubec, David [1 ,2 ]
Vondrasek, Jiri [1 ]
Finn, Robert D. [3 ]
机构
[1] Czech Acad Sci, Inst Organ Chem & Biochem, Dept Bioinformat, Prague 16610 6, Czech Republic
[2] Charles Univ Prague, Fac Sci, Dept Phys & Macromol Chem, Prague 12843 2, Czech Republic
[3] European Bioinformat Inst EMBL EBI, European Mol Biol Lab, Wellcome Trust Genome Campus, Cambridge CB10 1SD, England
关键词
D O I
10.1093/bioinformatics/bty464
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Amino acid residues showing above background levels of conservation are often indicative of functionally significant regions within a protein. Understanding how the sequence conservation profile relates in space requires projection onto a protein structure, a potentially time-consuming process. 3DPatch is a web application that streamlines this task by automatically generating multiple sequence alignments (where appropriate) and finding structural homologs, presenting the user with a choice of structures matching their query, annotated with residue conservation scores in a matter of seconds.
引用
收藏
页码:332 / 334
页数:3
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