3DPatch: fast 3D structure visualization with residue conservation

被引:3
|
作者
Jakubec, David [1 ,2 ]
Vondrasek, Jiri [1 ]
Finn, Robert D. [3 ]
机构
[1] Czech Acad Sci, Inst Organ Chem & Biochem, Dept Bioinformat, Prague 16610 6, Czech Republic
[2] Charles Univ Prague, Fac Sci, Dept Phys & Macromol Chem, Prague 12843 2, Czech Republic
[3] European Bioinformat Inst EMBL EBI, European Mol Biol Lab, Wellcome Trust Genome Campus, Cambridge CB10 1SD, England
关键词
D O I
10.1093/bioinformatics/bty464
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Amino acid residues showing above background levels of conservation are often indicative of functionally significant regions within a protein. Understanding how the sequence conservation profile relates in space requires projection onto a protein structure, a potentially time-consuming process. 3DPatch is a web application that streamlines this task by automatically generating multiple sequence alignments (where appropriate) and finding structural homologs, presenting the user with a choice of structures matching their query, annotated with residue conservation scores in a matter of seconds.
引用
收藏
页码:332 / 334
页数:3
相关论文
共 50 条
  • [31] 3D SlicerUniverselle 3D-Visualisierung-Software3D SlicerUniversal 3D visualization software
    Nico Bruns
    Der Unfallchirurg, 2019, 122 (8): : 662 - 663
  • [32] 3D structure of kaliotoxin: Is residue 34 a key for channel selectivity?
    Gairi, M
    Romi, R
    Fernandez, I
    Rochat, H
    Martin-Eauclaire, MF
    Van Rietschoten, J
    Pons, M
    Giralt, E
    JOURNAL OF PEPTIDE SCIENCE, 1997, 3 (04) : 314 - 319
  • [33] A fast scene constructing method for 3D power big data visualization
    Qu, Zhao-Yang
    Huang, Jing-Yuan
    Journal of Communications, 2015, 10 (10): : 773 - 777
  • [34] Study of 3D Visualization of FAST Active Reflector based on OpenGL and EPICS
    Luo, Ming-cheng
    Wu, Wen-qing
    Tang, Peng-yi
    Liu, Jia-jin
    Wang, Jian
    2013 IEEE NUCLEAR SCIENCE SYMPOSIUM AND MEDICAL IMAGING CONFERENCE (NSS/MIC), 2013,
  • [35] A Fast Ultrasound Molecular Imaging Method and its 3D Visualization in vivo
    Hu, Xiaowen
    Mahakian, Lisa
    Caskey, Charles
    Beegle, Julie
    Kruse, Dustin
    Rychak, Joshua
    Sutcliffe, Patrick
    Ferrara, Katherine
    2011 IEEE INTERNATIONAL ULTRASONICS SYMPOSIUM (IUS), 2011, : 1618 - 1621
  • [36] Study of technology of fast 3D modeling and visualization based on borehole data
    Liu Zhen-ping
    He Huai-jian
    Zhu Fa-hua
    ROCK AND SOIL MECHANICS, 2009, 30 : 260 - 266
  • [38] IEDB-3D 2.0: Enabling visualization of epitopes on the 3D structure of the corresponding antigens
    Mendes, Marcus F. De Almeida
    Mahita, Jarjapu
    Blazeska, Nina
    Wheeler, Daniel
    Ha, Brendan
    Greenbaum, Jason
    Wang, Jiyao
    Shackelford, Deborah
    Sette, Alessandro
    Peters, Bjoern
    JOURNAL OF IMMUNOLOGY, 2023, 210 (01):
  • [39] Potential of Intraoperative 3D Photography and 3D Visualization in Breast Reconstruction
    Nicklaus, Krista M.
    Wang, Haoqi
    Bordes, Mary Catherine
    Zaharan, Alex
    Sampathkumar, Urmila
    Cheong, Audrey L.
    Reece, Gregory P.
    Hanson, Summer E.
    Merchant, Fatima A.
    Markey, Mia K.
    PLASTIC AND RECONSTRUCTIVE SURGERY-GLOBAL OPEN, 2021, 9 (10) : E3845
  • [40] 3D modeling and visualization of stratum based on Java/Java 3D
    Yang, Xiao-Dong
    Hu, Li-Tang
    Tang, Zhong-Hua
    Cehui Xuebao/Acta Geodaetica et Cartographica Sinica, 2006, 35 (02): : 166 - 170