Current Status and Challenges of DNA Base Editing Tools

被引:83
|
作者
Jeong, You Kyeong [1 ,2 ]
Song, Beomjong [3 ]
Bae, Sangsu [1 ,2 ]
机构
[1] Hanyang Univ, Dept Chem, Seoul 04763, South Korea
[2] Hanyang Univ, Res Inst Convergence Basic Sci, Seoul 04763, South Korea
[3] Univ Tokyo, Int Res Ctr Neurointelligence WPI IRCN, Bunkyo Ku, Tokyo 1130033, Japan
基金
新加坡国家研究基金会;
关键词
OFF-TARGET; WEB TOOL; CRYSTAL-STRUCTURE; STRUCTURAL BASIS; GENOMIC DNA; CRISPR; CAS9; DEAMINATION; DIVERSITY; APOBEC3A;
D O I
10.1016/j.ymthe.2020.07.021
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
CRISPR-mediated DNA base editors, which include cytosine base editors (CBEs) and adenine base editors (ABEs), are promising tools that can induce point mutations at desired sites in a targeted manner to correct or disrupt gene expression. Their high editing efficiency, coupled with their ability to generate a targeted mutation without generating a DNA double-strand break (DSB) or requiring a donor DNA template, suggests that DNA base editors will be useful for treating genetic diseases, among other applications. However, this hope has recently been challenged by the discovery of DNA base editor shortcomings, including off-target DNA editing, the generation of bystander mutations, and promiscuous deamination effects in both DNA and RNA, which arise from the main DNA base editor constituents, a Cas nuclease variant and a deaminase. In this review, we summarize information about the DNA base editors that have been developed to date, introduce their associated potential challenges, and describe current efforts to minimize or mitigate those issues of DNA base editors.
引用
收藏
页码:1938 / 1952
页数:15
相关论文
共 50 条
  • [31] CYANOBACTERIAL GENETIC TOOLS - CURRENT STATUS
    HOUMARD, J
    DEMARSAC, NT
    METHODS IN ENZYMOLOGY, 1988, 167 : 808 - 847
  • [32] Validated Assessment Tools and Maintenance of Certification in Plastic Surgery: Current Status, Challenges, and Future Possibilities
    Janis, Jeffrey E.
    Vedder, Nicholas B.
    Reid, Christopher M.
    Gosman, Amanda
    Mann, Karen
    PLASTIC AND RECONSTRUCTIVE SURGERY, 2016, 137 (04) : 1327 - 1333
  • [33] Green tools: Current status and future
    Locatelli, Marcello
    Kabir, Abuzar
    Perrucci, Miryam
    Ulusoy, Songuel
    Ulusoy, Halil Ibrahim
    Ali, Imran
    ADVANCES IN SAMPLE PREPARATION, 2023, 6
  • [34] Web-based design and analysis tools for CRISPR base editing
    Gue-Ho Hwang
    Jeongbin Park
    Kayeong Lim
    Sunghyun Kim
    Jihyeon Yu
    Eunchong Yu
    Sang-Tae Kim
    Roland Eils
    Jin-Soo Kim
    Sangsu Bae
    BMC Bioinformatics, 19
  • [35] Web-based design and analysis tools for CRISPR base editing
    Hwang, Gue-Ho
    Park, Jeongbin
    Lim, Kayeong
    Kim, Sunghyun
    Yu, Jihyeon
    Yu, Eunchong
    Kim, Sang-Tae
    Eils, Roland
    Kim, Jin-Soo
    Bae, Sangsu
    BMC BIOINFORMATICS, 2018, 19
  • [36] CRISPR-Cas9 DNA Base-Editing and Prime-Editing
    Kantor, Ariel
    McClements, Michelle E.
    MacLaren, Robert E.
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2020, 21 (17) : 1 - 22
  • [37] DNA molecular markers in plant breeding: current status and recent advancements in genomic selection and genome editing
    Nadeem, Muhammad Azhar
    Nawaz, Muhammad Amjad
    Shahid, Muhammad Qasim
    Dogan, Yildiz
    Comertpay, Gonul
    Yildiz, Mehtap
    Hatipoglu, Rustu
    Ahmad, Fiaz
    Alsaleh, Ahmad
    Labhane, Nitin
    Ozkan, Hakan
    Chung, Gyuhwa
    Baloch, Faheem Shehzad
    BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT, 2018, 32 (02) : 261 - 285
  • [38] Engineered deaminases as a key component of DNA and RNA editing tools
    Budzko, Lucyna
    Hoffa-Sobiech, Karolina
    Jackowiak, Paulina
    Figlerowicz, Marek
    MOLECULAR THERAPY NUCLEIC ACIDS, 2023, 34
  • [39] Gene editing on the farm: Current status and future prospects
    Beaton, Benjamin
    JOURNAL OF ANIMAL SCIENCE, 2024, 102 : 12 - 12
  • [40] Current status and perspectives of genome editing technology for microalgae
    Jeon, Seungjib
    Lim, Jong-Min
    Lee, Hyung-Gwan
    Shin, Sung-Eun
    Kang, Nam Kyu
    Park, Youn-Il
    Oh, Hee-Mock
    Jeong, Won-Joong
    Jeong, Byeong-ryool
    Chang, Yong Keun
    BIOTECHNOLOGY FOR BIOFUELS, 2017, 10