Substructure determination using phase-retrieval techniques

被引:12
|
作者
Skubak, Pavol [1 ]
机构
[1] Leiden Univ, Biophys Struct Chem, POB 9502, NL-2300 RA Leiden, Netherlands
关键词
substructure determination; single-wavelength anomalous scattering; phase retrieval; charge flipping; relaxed averaged alternating reflections; PRASA; CHARGE-FLIPPING ALGORITHM; ANOMALOUS SIGNAL; IMPLEMENTATION; DESIGN; MODEL;
D O I
10.1107/S2059798317014462
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Thus far, the application of phase-retrieval methods in crystallography has mainly been aimed at variants of charge flipping or structure-factor flipping. In this work, the relaxed averaged alternating reflections (RAAR) algorithm is applied to determine anomalously scattering substructures from single-wavelength anomalous diffraction (SAD) data of macromolecules. The algorithm has been implemented in a new program, PRASA, and has been shown to significantly outperform charge flipping in determining anomalously scattering substructures on a test sample of 169 SAD data sets with resolutions up to 3.88 angstrom.
引用
收藏
页码:117 / 124
页数:8
相关论文
共 50 条
  • [31] PHASE-RETRIEVAL PROBLEM AND ORTHOGONAL EXPANSIONS - CURVATURE SENSING
    VOITSEKHOVICH, VV
    JOURNAL OF THE OPTICAL SOCIETY OF AMERICA A-OPTICS IMAGE SCIENCE AND VISION, 1995, 12 (10): : 2194 - 2202
  • [32] APPLICATIONS OF THE MAXIMUM-LIKELIHOOD PHASE-RETRIEVAL ALGORITHM
    NAHRSTEDT, DA
    SOUTHWELL, WH
    JOURNAL OF THE OPTICAL SOCIETY OF AMERICA A-OPTICS IMAGE SCIENCE AND VISION, 1984, 1 (12): : 1319 - 1319
  • [33] Reconstruction of Ultrafast Exciton Dynamics with a Phase-retrieval Algorithm
    Moio, Bruno
    Dols, Gian Luca
    Inzani, Giacomo
    Di Palo, Nicola
    Borrego-Varillas, Rocio
    Nisoli, Mauro
    Lucchini, Matteo
    2021 CONFERENCE ON LASERS AND ELECTRO-OPTICS EUROPE & EUROPEAN QUANTUM ELECTRONICS CONFERENCE (CLEO/EUROPE-EQEC), 2021,
  • [34] Numerical correction of lens aberrations in phase-retrieval HRTEM
    Thust, A
    Overwijk, MHF
    Coene, WMJ
    Lentzen, M
    ULTRAMICROSCOPY, 1996, 64 (1-4) : 249 - 264
  • [35] PHASE-RETRIEVAL ALGORITHMS FOR A COMPLICATED OPTICAL-SYSTEM
    FIENUP, JR
    APPLIED OPTICS, 1993, 32 (10): : 1737 - 1746
  • [36] Phase-Retrieval Algebraic Solution Based on Window Modulation
    Huang, Jianhui
    Jin, Huiliang
    Ye, Qian
    Meng, Guoxiang
    ANNALEN DER PHYSIK, 2018, 530 (10)
  • [37] MAXIMUM-LIKELIHOOD PHASE-RETRIEVAL ALGORITHM - APPLICATIONS
    NAHRSTEDT, DA
    SOUTHWELL, WH
    APPLIED OPTICS, 1984, 23 (23): : 4328 - &
  • [38] Reconstruction of ultrafast exciton dynamics with a phase-retrieval algorithm
    Dolso, Gian Luca
    Moio, Bruno
    Inzani, Giacomo
    Di Palo, Nicola
    Sato, Shunsuke A.
    Borrego-Varillas, Rocio
    Nisoli, Mauro
    Lucchini, Matteo
    OPTICS EXPRESS, 2022, 30 (08) : 12248 - 12267
  • [39] Domino phase-retrieval algorithm for structure determination using electron diffraction and high-resolution transmission electron microscopy patterns
    Chukhovskii, FN
    Poliakov, AM
    ACTA CRYSTALLOGRAPHICA SECTION A, 2003, 59 : 48 - 53
  • [40] Robustness of a phase-retrieval approach based on phase-attenuation duality
    Wu, Xizeng
    Liu, Hong
    Yan, Aimin
    JOURNAL OF X-RAY SCIENCE AND TECHNOLOGY, 2007, 15 (02) : 85 - 95