Direct protein identification from nonspecific peptide pools by high-accuracy MS data filtering

被引：13

作者：

Thieu, Vinh An

Kirsch, Dieter

Flad, Thomas

Mueller, Claudia

Spengler, Bernhard ^{[1
]}

机构：

[1] Univ Giessen, Inst Anorgan & Analyt Chem, D-35392 Giessen, Germany

[2] Univ Tubingen, Med Klin & Poliklin, Abt 2, Sekt Transplantat Immunol & Immunhamatol, D-72072 Tubingen, Germany

来源：

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION | 2006年 / 45卷 / 20期

关键词：

high mass accuracy; mass spectrometry; peptide sequencing; protein structures; sequence determination;

D O I：

10.1002/anie.200503787

中图分类号：

O6 [化学];

学科分类号：

0703 ;

摘要：

Validate your results! High-accuracy mass spectrometric analysis and composition-based de novo sequencing (CBS) combined with database(DB)-assisted protein identification allows for the rapid production of validated analytical results in proteome research. A simplified sample preparation scheme is sufficient to provide for reliable identification of proteins even when following nonspecific and unknown degradation processes. (Figure Presented). © 2006 Wiley-VCH Verlag GmbH & Co. KGaA.

引用

页码：3317 / 3319

页数：3

共 50 条

[1] Filtering of MS/MS data for peptide identification
Jason Gallia
Katelyn Lavrich
Anna Tan-Wilson
Patrick H Madden
BMC Genomics, 14
[2] Filtering of MS/MS data for peptide identification
Gallia, Jason
Lavrich, Katelyn
Tan-Wilson, Anna
Madden, Patrick H.
BMC GENOMICS, 2013, 14
[3] Utilization of high-accuracy FTICR-MS data in protein quantitation experiments
Strohalm, Martin
Novak, Petr
Pompach, Petr
Man, Petr
Kavan, Daniel
Witt, Matthias
Dzubak, Petr
Hajduch, Marian
Havlicek, Vladimir
JOURNAL OF MASS SPECTROMETRY, 2009, 44 (11): : 1565 - 1570
[4] Effect of High-Accuracy Precursor Masses on Phosphopeptide Identification from MS3 Spectra
Timm, Wiebke
Ozlu, Nurhan
Steen, Judith J.
Steen, Hanno
ANALYTICAL CHEMISTRY, 2010, 82 (10) : 3977 - 3980
[5] Postexperiment monoisotopic mass filtering and refinement (PE-MMR) of tandem mass spectrometric data increases accuracy of peptide identification in LC/MS/MS
Shin, Byunghee
Jung, Hee-Jung
Hyung, Seok-Won
Kim, Hokeun
Lee, Dongkyu
Lee, Cheolju
Yu, Myeong-Hee
Lee, Sang-Won
MOLECULAR & CELLULAR PROTEOMICS, 2008, 7 (06) : 1124 - 1134
[6] High-accuracy identification and bioinformatic analysis of in vivo protein phosphorylation sites in yeast
Gnad, Florian
de Godoy, Lyris M. F.
Cox, Juergen
Neuhauser, Nadin
Ren, Shubin
Olsen, Jesper V.
Mann, Matthias
PROTEOMICS, 2009, 9 (20) : 4642 - 4652
[7] Software for computational peptide identification from MS-MS data
Xu, Changjiang
Ma, Bin
DRUG DISCOVERY TODAY, 2006, 11 (13-14) : 595 - 600
[8] Filtering strategies for improving protein identification in high-throughput MS/MS studies
Salmi, Jussi
Nyman, Tuula A.
Nevalainen, Olli S.
Aittokallio, Tero
PROTEOMICS, 2009, 9 (04) : 848 - 860
[9] High-accuracy peptide mass fingerprinting using peak intensity data with machine learning
Yang, Dongmei
Ramidssoon, Kevin
Hamlett, Eric
Giddings, Morgan C.
JOURNAL OF PROTEOME RESEARCH, 2008, 7 (01) : 62 - 69
[10] pTop 1.0: A High-Accuracy and High-Efficiency Search Engine for Intact Protein Identification
Sun, Rui-Xiang
Luo, Lan
Wu, Long
Wang, Rui-Min
Zeng, Wen-Feng
Chi, Hao
Liu, Chao
He, Si-Min
ANALYTICAL CHEMISTRY, 2016, 88 (06) : 3082 - 3090

← 1 2 3 4 5 →