Pan-cancer analysis of IFN-? with possible immunotherapeutic significance: a verification of single-cell sequencing and bulk omics research

被引:1
|
作者
Wei, Xiaoying [1 ,2 ]
Ruan, Hanyi [3 ]
Zhang, Yan [3 ]
Qin, Tianyu [3 ]
Zhang, Yujie [3 ]
Qin, Yan [1 ,2 ]
Li, Wei [1 ,2 ]
机构
[1] Guangxi Acad Med Sci, Peoples Hosp Guangxi Zhuang Autonomous Reg, Dept Hlth Management, Nanning, Peoples R China
[2] Guangxi Acad Med Sci, Res Ctr Hlth Management, Nanning, Peoples R China
[3] Guangxi Med Univ, Canc Hosp, Dept Oncol, Nanning, Peoples R China
来源
FRONTIERS IN IMMUNOLOGY | 2023年 / 14卷
关键词
IFN-& gamma; tumor microenvironment; immunotherapy; pan-cancer; single-cell transcriptome sequencing; INTERFERON-GAMMA; EXPRESSION; METHYLATION; SENSITIVITY; ACTIVATION; APOPTOSIS; BLOCKADE; PATHWAY; INNATE; ROLES;
D O I
10.3389/fimmu.2023.1202150
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
Background Interferon-gamma (IFN-?), commonly referred to as type II interferon, is a crucial cytokine that coordinates the tumor immune process and has received considerable attention in tumor immunotherapy research. Previous studies have discussed the role and mechanisms associated with IFN-? in specific tumors or diseases, but the relevant role of IFN-? in pan-cancer remains uncertain.Methods TCGA and GTEx RNA expression data and clinical data were downloaded. Additionally, we analyzed the role of IFN-? on tumors by using a bioinformatic approach, which included the analysis of the correlation between IFN-? in different tumors and expression, prognosis, functional status, TMB, MSI, immune cell infiltration, and TIDE. We also developed a PPI network for topological analysis of the network, identifying hub genes as those having a degree greater than IFN-? levels.Result IFN-? was differentially expressed and predicted different survival statuses in a majority of tumor types in TCGA. Additionally, IFN-? expression was strongly linked to factors like infiltration of T cells, immune checkpoints, immune-activating genes, immunosuppressive genes, chemokines, and chemokine receptors, as well as tumor purity, functional statuses, and prognostic value. Also, prognosis, CNV, and treatment response were all substantially correlated with IFN-?-related gene expression. Particularly, the IFN-?-related gene STAT1 exhibited the greatest percentage of SNVs and the largest percentage of SNPs in UCEC. Elevated expression levels of IFN-?-related genes were found in a wide variety of tumor types, and this was shown to be positively linked to drug sensitivity for 20 different types of drugs.Conclusion IFN-? is a good indicator of response to tumor immunotherapy and is likely to limit tumor progression, offering a novel approach for immunotherapy's future development.
引用
收藏
页数:16
相关论文
共 50 条
  • [41] Metabolic reprogramming landscape of pan-cancer by single-cell transcriptome data integration
    Shang, Yunfei
    Zeng, Jingyao
    Mai, Jialin
    Xiao, Jingfa
    SCIENCE BULLETIN, 2025, 70 (06) : 852 - 855
  • [42] A pan-cancer single-cell transcriptional atlas of tumor infiltrating myeloid cells
    Cheng, Sijin
    Li, Ziyi
    Gao, Ranran
    Xing, Baocai
    Gao, Yunong
    Yang, Yu
    Qin, Shishang
    Zhang, Lei
    Ouyang, Hanqiang
    Du, Peng
    Jiang, Liang
    Zhang, Bin
    Yang, Yue
    Wang, Xiliang
    Ren, Xianwen
    Bei, Jin-Xin
    Hu, Xueda
    Bu, Zhaode
    Ji, Jiafu
    Zhang, Zemin
    CELL, 2021, 184 (03) : 792 - +
  • [43] The Pan-Cancer Analysis Uncovers the Prognostic and Immunotherapeutic Significance of CD19 as an Immune Marker in Tumor
    Wei, Lanyi
    Meng, Jingjing
    Xiang, Danfeng
    Yang, Quanjun
    Zhou, Yangyun
    Xu, Lingyan
    Chen, Junjun
    Han, Yonglong
    INTERNATIONAL JOURNAL OF GENERAL MEDICINE, 2024, 17 : 2593 - 2612
  • [44] Pan-cancer single-cell landscape of drug-metabolizing enzyme genes
    Mao, Wei
    Zhou, Tao
    Zhang, Feng
    Qian, Maoxiang
    Xie, Jianqiang
    Li, Zhengyan
    Shu, Yang
    Li, Yuan
    Xu, Heng
    PHARMACOGENETICS AND GENOMICS, 2024, 34 (07): : 217 - 225
  • [45] Pan-Cancer and Single-Cell Modeling of Genomic Alterations Through Gene Expression
    Mercatelli, Daniele
    Ray, Forest
    Giorgi, Federico M.
    FRONTIERS IN GENETICS, 2019, 10
  • [46] Advances and applications of single-cell omics technologies in cancer research
    Maruyama, Reo
    CANCER SCIENCE, 2022, 113 : 622 - 622
  • [47] Pan-cancer single-cell analysis reveals the heterogeneity and plasticity of cancer-associated fibroblasts in the tumor microenvironment
    Han Luo
    Xuyang Xia
    Li-Bin Huang
    Hyunsu An
    Minyuan Cao
    Gyeong Dae Kim
    Hai-Ning Chen
    Wei-Han Zhang
    Yang Shu
    Xiangyu Kong
    Zhixiang Ren
    Pei-Heng Li
    Yang Liu
    Huairong Tang
    Ronghao Sun
    Chao Li
    Bing Bai
    Weiguo Jia
    Yi Liu
    Wei Zhang
    Li Yang
    Yong Peng
    Lunzhi Dai
    Hongbo Hu
    Yong Jiang
    Yiguo Hu
    Jingqiang Zhu
    Hong Jiang
    Zhihui Li
    Carlos Caulin
    Jihwan Park
    Heng Xu
    Nature Communications, 13
  • [48] Pan-cancer and single-cell analysis reveals FAM83D expression as a cancer prognostic biomarker
    Yu, Haiyang
    Chen, Qinhao
    Wang, Ziming
    Qian, Xiaojun
    Pan, Yueyin
    FRONTIERS IN GENETICS, 2022, 13
  • [49] Pan-Cancer and Single-Cell Analysis Reveals CENPL as a Cancer Prognosis and Immune Infiltration-Related Biomarker
    Feng, Ziyang
    Chen, Yu
    Cai, Changjing
    Tan, Jun
    Liu, Ping
    Chen, Yihong
    Shen, Hong
    Zeng, Shan
    Han, Ying
    FRONTIERS IN IMMUNOLOGY, 2022, 13
  • [50] Multi-omics and single-cell sequencing analyses reveal the potential significance of circadian pathways in cancer therapy
    Lai, Hao
    Xiang, Xiaoyun
    Long, Xingqing
    Chen, Zuyuan
    Liu, Yanling
    Huang, Xiaoliang
    EXPERT REVIEW OF MOLECULAR DIAGNOSTICS, 2024, 24 (1-2) : 107 - 121