Pan-cancer analysis of IFN-? with possible immunotherapeutic significance: a verification of single-cell sequencing and bulk omics research

被引:1
|
作者
Wei, Xiaoying [1 ,2 ]
Ruan, Hanyi [3 ]
Zhang, Yan [3 ]
Qin, Tianyu [3 ]
Zhang, Yujie [3 ]
Qin, Yan [1 ,2 ]
Li, Wei [1 ,2 ]
机构
[1] Guangxi Acad Med Sci, Peoples Hosp Guangxi Zhuang Autonomous Reg, Dept Hlth Management, Nanning, Peoples R China
[2] Guangxi Acad Med Sci, Res Ctr Hlth Management, Nanning, Peoples R China
[3] Guangxi Med Univ, Canc Hosp, Dept Oncol, Nanning, Peoples R China
来源
FRONTIERS IN IMMUNOLOGY | 2023年 / 14卷
关键词
IFN-& gamma; tumor microenvironment; immunotherapy; pan-cancer; single-cell transcriptome sequencing; INTERFERON-GAMMA; EXPRESSION; METHYLATION; SENSITIVITY; ACTIVATION; APOPTOSIS; BLOCKADE; PATHWAY; INNATE; ROLES;
D O I
10.3389/fimmu.2023.1202150
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
Background Interferon-gamma (IFN-?), commonly referred to as type II interferon, is a crucial cytokine that coordinates the tumor immune process and has received considerable attention in tumor immunotherapy research. Previous studies have discussed the role and mechanisms associated with IFN-? in specific tumors or diseases, but the relevant role of IFN-? in pan-cancer remains uncertain.Methods TCGA and GTEx RNA expression data and clinical data were downloaded. Additionally, we analyzed the role of IFN-? on tumors by using a bioinformatic approach, which included the analysis of the correlation between IFN-? in different tumors and expression, prognosis, functional status, TMB, MSI, immune cell infiltration, and TIDE. We also developed a PPI network for topological analysis of the network, identifying hub genes as those having a degree greater than IFN-? levels.Result IFN-? was differentially expressed and predicted different survival statuses in a majority of tumor types in TCGA. Additionally, IFN-? expression was strongly linked to factors like infiltration of T cells, immune checkpoints, immune-activating genes, immunosuppressive genes, chemokines, and chemokine receptors, as well as tumor purity, functional statuses, and prognostic value. Also, prognosis, CNV, and treatment response were all substantially correlated with IFN-?-related gene expression. Particularly, the IFN-?-related gene STAT1 exhibited the greatest percentage of SNVs and the largest percentage of SNPs in UCEC. Elevated expression levels of IFN-?-related genes were found in a wide variety of tumor types, and this was shown to be positively linked to drug sensitivity for 20 different types of drugs.Conclusion IFN-? is a good indicator of response to tumor immunotherapy and is likely to limit tumor progression, offering a novel approach for immunotherapy's future development.
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页数:16
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