Improving ab initio diffusion calculations in materials through Gaussian process regression

被引:0
|
作者
Fattahpour, Seyyedfaridoddin [1 ]
Kadkhodaei, Sara [1 ]
机构
[1] Univ Illinois, Dept Civil Mat & Environm Engn, Chicago, IL 60607 USA
基金
美国国家科学基金会;
关键词
FINDING SADDLE-POINTS; ELASTIC BAND METHOD; TRANSITION-STATES;
D O I
10.1103/PhysRevMaterials.8.013804
中图分类号
T [工业技术];
学科分类号
08 ;
摘要
Saddle point search schemes are widely used to identify the transition state of different processes, like chemical reactions, surface and bulk diffusion, surface adsorption, and many more. In solid-state materials with relatively large numbers of atoms, the minimum mode following schemes such as dimer are commonly used because they alleviate the calculation of the Hessian on the high-dimensional potential energy surface. Here, we show that the dimer search can be further accelerated by leveraging Gaussian process regression (GPR). The GPR serves as a surrogate model to feed the dimer with the required energy and force input. We test the GPR-accelerated dimer method for predicting the diffusion coefficient of vacancy-mediated self-diffusion in body-centered cubic molybdenum and sulfur diffusion in hexagonal molybdenum disulfide. We use a multitask learning approach that utilizes a shared covariance function between energy and force input, and we show that the multitask learning significantly improves the performance of the GPR surrogate model compared to previously used learning approaches. Additionally, we demonstrate that a translation-hop sampling approach is necessary to avoid overfitting the GPR surrogate model to the minimum-mode-following pathway and thus succeeding in locating the saddle point. We show that our method reduces the number of evaluations compared to a conventional dimer method.
引用
收藏
页数:12
相关论文
共 50 条
  • [41] Nudged elastic band calculations accelerated with Gaussian process regression
    Koistinen, Olli-Pekka
    Dagbjartsdottir, Freyja B.
    Asgeirsson, Vilhjalmur
    Vehtari, Aki
    Jonsson, Hannes
    JOURNAL OF CHEMICAL PHYSICS, 2017, 147 (15):
  • [42] Reliability of gaussian based ab initio methods in the calculations of HCIO and HOCI decomposition channels
    Jalbout, AF
    Solimannejad, M
    JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM, 2003, 626 : 87 - 90
  • [43] AB-INITIO CALCULATIONS WITH SMALL ELLIPSOIDAL GAUSSIAN BASIS SETS .2.
    VANDUIJNEN, PT
    COOK, DB
    MOLECULAR PHYSICS, 1971, 22 (04) : 637 - +
  • [44] Ab initio calculations with a nonspherical Gaussian basis set:: Excited states of the hydrogen molecule
    Detmer, T
    Schmelcher, P
    Cederbaum, LS
    JOURNAL OF CHEMICAL PHYSICS, 1998, 109 (22): : 9694 - 9700
  • [45] AB-INITIO CALCULATIONS WITH SMALL ELLIPSOIDAL GAUSSIAN BASIS SETS .1.
    VANDUIJNEN, PT
    COOK, DB
    MOLECULAR PHYSICS, 1971, 21 (03) : 475 - +
  • [46] SMALL GAUSSIAN-BASIS SETS FOR AB-INITIO CALCULATIONS ON LARGE MOLECULES
    MEHLER, EL
    PAUL, CH
    CHEMICAL PHYSICS LETTERS, 1979, 63 (01) : 145 - 150
  • [47] Improving the deconvolution and interpretation of XPS spectra from chars by ab initio calculations
    Smith, Matthew
    Scudiero, Louis
    Espinal, Juan
    McEwen, Jean-Sabin
    Garcia-Perez, Manuel
    CARBON, 2016, 110 : 155 - 171
  • [48] Improving the efficiency of ab initio electronic-structure calculations by deep learning
    Li, He
    Xu, Yong
    NATURE COMPUTATIONAL SCIENCE, 2022, 2 (07): : 418 - 419
  • [49] Ab-initio calculations to predict stress effects on defects and diffusion in silicon
    Diebel, M
    Dunham, ST
    2003 IEEE INTERNATIONAL CONFERENCE ON SIMULATION OF SEMICONDUCTOR PROCESSES AND DEVICES, 2003, : 147 - 150
  • [50] CONFORMATION AND HYPERFINE SPLITTINGS OF ACETYL RADICAL THROUGH AB INITIO CALCULATIONS
    VEILLARD, H
    REES, B
    CHEMICAL PHYSICS LETTERS, 1971, 8 (03) : 267 - &