A simple alkali lysis method for Plasmodium falciparum DNA extraction from filter paper blood samples

被引:3
|
作者
Xiang, Zheng [1 ]
Li, Danlin [1 ]
Wang, Siqi [1 ]
Shen, Ting [1 ]
He, Wen [1 ]
Li, Mier [1 ]
Zeng, Weilin [1 ]
Chen, Xi [1 ]
Wu, Yanrui [3 ]
Cui, Liwang [2 ]
Yang, Zhaoqing [1 ]
机构
[1] Kunming Med Univ, Fac Basic Med Sci, Dept Pathogen Biol & Immunol, Kunming 650500, Yunnan, Peoples R China
[2] Univ S Florida, Dept Internal Med, Tampa, FL 33612 USA
[3] Kunming Med Univ, Dept Cell Biol & Genet, Kunming 650500, Yunnan, Peoples R China
基金
美国国家卫生研究院; 美国国家科学基金会;
关键词
DNA extraction; Alkali lysis; Plasmodium falciparum; POLYMERASE-CHAIN-REACTION; REAL-TIME-PCR; MALARIA DETECTION; GENOMIC DNA; DRIED BLOOD; SENSITIVITY; DIAGNOSIS; SPOTS;
D O I
10.1016/j.molbiopara.2023.111557
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A fast, simple, easy, efficient, and inexpensive method for DNA extraction from malaria parasites collected on filter paper would be very useful for molecular surveillance. The quality and quantity of DNA are critical to molecular diagnosis and analysis. Here, we developed a simple alkali lysis method for DNA extraction from blood samples on filter paper. The results showed that 10-50 mM NaOH and deionized water all effectively isolated parasite DNA at higher parasitemia, as witnessed by successful PCR amplification, while at a parasitemia of 0.01%, the 10 mM NaOH lysis condition generated the best results. Furthermore, DNA extracted by this method was successfully used to amplify a fragment of > 2000 bp. This method successfully extracted DNA from 1 mu l of blood at a parasitemia as low as 0.0001% (equivalent to 5 parasites /mu l). The DNA isolated by the 10 mM NaOH lysis method was stable to yield PCR products after storage at 4 degrees C or -20 degrees C for 12 months. These results indicate that this alkali lysis method is simple, effective, sensitive, and inexpensive for isolating stable Plasmo-dium DNA from dried blood spots on filter paper.
引用
收藏
页数:6
相关论文
共 50 条
  • [41] Modification of the filter-inserted tip method for simple and rapid DNA extraction from strawberry
    Watanabe, Manabu
    Fukami, Masanobu
    PLANT BIOTECHNOLOGY, 2016, 33 (02) : 133 - 136
  • [42] Simple method for removing humic acids from marine sediment samples prior to DNA extraction
    Xi, Feng
    Fu, Lianying
    Wang, Guizhong
    Zheng, Tianling
    Gaojishu Tongxin/Chinese High Technology Letters, 2006, 16 (05): : 539 - 544
  • [43] Comparison of four methods for extracting DNA from dried blood on filter paper for PCR targeting the mitochondrial Plasmodium genome
    Strom, Gro E. A.
    Tellevik, Marit G.
    Hanevik, Kurt
    Langeland, Nina
    Blomberg, Bjorn
    TRANSACTIONS OF THE ROYAL SOCIETY OF TROPICAL MEDICINE AND HYGIENE, 2014, 108 (08) : 488 - 494
  • [44] Simple and rapid method for extraction of DNA from fresh and cryopreserved clotted human blood
    Garg, UC
    Hanson, NQ
    Tsai, MY
    Eckfeldt, JH
    CLINICAL CHEMISTRY, 1996, 42 (04) : 647 - 648
  • [45] A Double Lysis Method for Animal Rotavirus RNA Extraction From Stool Samples
    Acquah, Maame Ekua
    Adadey, Samuel Mawuli
    Languon, Sylvester
    Quaye, Osbourne
    CURRENT PROTOCOLS, 2024, 4 (10):
  • [46] A dried blood sample on filter paper is suitable for detecting Plasmodium falciparum gametocytes by reverse transcription polymerase chain reaction
    Maeno, Yoshimasa
    Nakazawa, Shusuke
    Dao, Le Duc
    Yamamoto, Naoki
    Giang, Nguyen Duc
    Van Hanh, Truong
    Thuan, Le Khanh
    Taniguchi, Koki
    ACTA TROPICA, 2008, 107 (02) : 121 - 127
  • [47] Validation of BTA(TM) lysis buffer for DNA extraction from challenged forensic samples
    Barbaro, A.
    Cormaci, P.
    Falcone, G.
    FORENSIC SCIENCE INTERNATIONAL GENETICS SUPPLEMENT SERIES, 2011, 3 (01) : E61 - E62
  • [48] SIMPLE METHOD FOR DIAGNOSIS OF PLASMODIUM-FALCIPARUM MALARIA BY POLYMERASE CHAIN-REACTION FROM DRIED BLOOD SPOT SAMPLES (VOL 52, PG 344, 1995)
    LONG, GW
    AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE, 1995, 53 (02): : 216 - 216
  • [49] SIMPLE METHOD FOR OBTAINING BLOOD SAMPLES FROM RATS
    HURWITZ, A
    JOURNAL OF LABORATORY AND CLINICAL MEDICINE, 1971, 78 (01): : 172 - &
  • [50] A SIMPLE METHOD FOR ISOLATING VIABLE MATURE PARASITES OF PLASMODIUM-FALCIPARUM FROM CULTURES
    DLUZEWSKI, AR
    LING, IT
    RANGACHARI, K
    BATES, PA
    WILSON, RJM
    TRANSACTIONS OF THE ROYAL SOCIETY OF TROPICAL MEDICINE AND HYGIENE, 1984, 78 (05) : 622 - 624