A simple alkali lysis method for Plasmodium falciparum DNA extraction from filter paper blood samples

被引:3
|
作者
Xiang, Zheng [1 ]
Li, Danlin [1 ]
Wang, Siqi [1 ]
Shen, Ting [1 ]
He, Wen [1 ]
Li, Mier [1 ]
Zeng, Weilin [1 ]
Chen, Xi [1 ]
Wu, Yanrui [3 ]
Cui, Liwang [2 ]
Yang, Zhaoqing [1 ]
机构
[1] Kunming Med Univ, Fac Basic Med Sci, Dept Pathogen Biol & Immunol, Kunming 650500, Yunnan, Peoples R China
[2] Univ S Florida, Dept Internal Med, Tampa, FL 33612 USA
[3] Kunming Med Univ, Dept Cell Biol & Genet, Kunming 650500, Yunnan, Peoples R China
基金
美国国家卫生研究院; 美国国家科学基金会;
关键词
DNA extraction; Alkali lysis; Plasmodium falciparum; POLYMERASE-CHAIN-REACTION; REAL-TIME-PCR; MALARIA DETECTION; GENOMIC DNA; DRIED BLOOD; SENSITIVITY; DIAGNOSIS; SPOTS;
D O I
10.1016/j.molbiopara.2023.111557
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A fast, simple, easy, efficient, and inexpensive method for DNA extraction from malaria parasites collected on filter paper would be very useful for molecular surveillance. The quality and quantity of DNA are critical to molecular diagnosis and analysis. Here, we developed a simple alkali lysis method for DNA extraction from blood samples on filter paper. The results showed that 10-50 mM NaOH and deionized water all effectively isolated parasite DNA at higher parasitemia, as witnessed by successful PCR amplification, while at a parasitemia of 0.01%, the 10 mM NaOH lysis condition generated the best results. Furthermore, DNA extracted by this method was successfully used to amplify a fragment of > 2000 bp. This method successfully extracted DNA from 1 mu l of blood at a parasitemia as low as 0.0001% (equivalent to 5 parasites /mu l). The DNA isolated by the 10 mM NaOH lysis method was stable to yield PCR products after storage at 4 degrees C or -20 degrees C for 12 months. These results indicate that this alkali lysis method is simple, effective, sensitive, and inexpensive for isolating stable Plasmo-dium DNA from dried blood spots on filter paper.
引用
收藏
页数:6
相关论文
共 50 条
  • [21] PCR targeting Plasmodium mitochondrial genome of DNA extracted from dried blood on filter paper compared to whole blood
    Strom, Gro E. A.
    Moyo, Sabrina
    Fataki, Maulidi
    Langeland, Nina
    Blomberg, Bjorn
    MALARIA JOURNAL, 2014, 13
  • [22] PCR targeting Plasmodium mitochondrial genome of DNA extracted from dried blood on filter paper compared to whole blood
    Gro EA Strøm
    Sabrina Moyo
    Maulidi Fataki
    Nina Langeland
    Bjørn Blomberg
    Malaria Journal, 13
  • [23] DNA extraction from filter-paper spots of vaginal samples collected after sexual violence
    Campos, Elisabete A.
    Pitta, Denise R.
    Costa, Fernanda A.
    Campos, Vanessa M.
    Yela, Daniela
    Fernandes, Arlete
    INTERNATIONAL JOURNAL OF GYNECOLOGY & OBSTETRICS, 2014, 126 (01) : 23 - 27
  • [24] A Simple and Cost-Effective Freeze-Thaw Based Method for Plasmodium DNA Extraction from Dried Blood Spot
    Sharma, Supriya
    Mann, Riti
    Kumar, Sandeep
    Mishra, Neelima
    Srivastava, Bina
    Valecha, Neena
    Anvikar, Anuplcumar R.
    IRANIAN JOURNAL OF PARASITOLOGY, 2019, 14 (01) : 29 - 40
  • [25] A Simple and Efficient Method for DNA Purification from Samples of Highly Clotted Blood
    Ruyi Xu
    Ping Ye
    Leiming Luo
    Hongmei Wu
    Jin Dong
    Xinxin Deng
    Molecular Biotechnology, 2010, 46 : 258 - 264
  • [26] RAPID AND SIMPLE METHOD FOR ISOLATING MALARIA DNA FROM FINGERPRICK SAMPLES OF BLOOD
    FOLEY, M
    RANFORDCARTWRIGHT, LC
    BABIKER, HA
    MOLECULAR AND BIOCHEMICAL PARASITOLOGY, 1992, 53 (1-2) : 241 - 244
  • [27] A Simple and Efficient Method for DNA Purification from Samples of Highly Clotted Blood
    Xu, Ruyi
    Ye, Ping
    Luo, Leiming
    Wu, Hongmei
    Dong, Jin
    Deng, Xinxin
    MOLECULAR BIOTECHNOLOGY, 2010, 46 (03) : 258 - 264
  • [28] SIMPLE LYSOPLATE METHOD OF LYSOZYME DETERMINATION WITH SAMPLES DRIED ON FILTER-PAPER
    MAEDA, K
    ITO, K
    YAMAGUCHI, N
    CLINICA CHIMICA ACTA, 1980, 100 (02) : 175 - 181
  • [29] SIMPLIFIED TECHNIQUES FOR EXTRACTION OF BLOOD AND SERUM FROM FILTER PAPER
    OPPELAAR, L
    TROPICAL AND GEOGRAPHICAL MEDICINE, 1966, 18 (01): : 67 - &
  • [30] Rapid method for screening dried blood samples on filter paper for human immunodeficiency virus type 1 DNA
    Panteleeff, DD
    John, G
    Nduati, R
    Mbori-Ngacha, D
    Richardson, B
    Kreiss, J
    Overbaugh, J
    JOURNAL OF CLINICAL MICROBIOLOGY, 1999, 37 (02) : 350 - 353