Deconvolution of 1D NMR spectra: A deep learning-based approach

被引:28
|
作者
Schmid, N. [1 ,2 ]
Bruderer, S. [4 ]
Paruzzo, F. [4 ]
Fischetti, G. [3 ]
Toscano, G. [4 ]
Graf, D. [4 ]
Fey, M. [4 ]
Henrici, A. [1 ]
Ziebart, V. [1 ]
Heitmann, B. [4 ]
Grabner, H. [1 ]
Wegner, J. D. [2 ]
Sigel, R. K. O. [2 ]
Wilhelm, D. [1 ]
机构
[1] Zurich Univ Appl Sci ZHAW, Zurich, Switzerland
[2] Univ Zurich UZH, Zurich, Switzerland
[3] Ca Foscari Univ Venice, Venice, Italy
[4] Bruker Switzerland AG, Fallanden, Switzerland
关键词
NMR Spectroscopy; Deconvolution; Machine learning; Deep learning; PEAK PICKING; SPECTROSCOPY; PREDICTION;
D O I
10.1016/j.jmr.2022.107357
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The analysis of nuclear magnetic resonance (NMR) spectra to detect peaks and characterize their parameters, often referred to as deconvolution, is a crucial step in the quantification, elucidation, and verification of the structure of molecular systems. However, deconvolution of 1D NMR spectra is a challenge for both experts and machines. We propose a robust, expert-level quality deep learning-based deconvolution algorithm for 1D experimental NMR spectra. The algorithm is based on a neural network trained on synthetic spectra. Our customized pre-processing and labeling of the synthetic spectra enable the estimation of critical peak parameters. Furthermore, the neural network model transfers well to the experimental spectra and demonstrates low fitting errors and sparse peak lists in challenging scenarios such as crowded, high dynamic range, shoulder peak regions as well as broad peaks. We demonstrate in challenging spectra that the proposed algorithm is superior to expert results.(c) 2022 The Author(s). Published by Elsevier Inc. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
引用
收藏
页数:11
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