Large clones of pre-existing T cells drive early immunity against SARS-COV-2 and LCMV infection

被引:4
|
作者
Milighetti, Martina [1 ]
Peng, Yanchu [2 ,3 ]
Tan, Cedric [5 ]
Mark, Michal [6 ]
Nageswaran, Gayathri [1 ]
Byrne, Suzanne [1 ]
Ronel, Tahel [1 ]
Peacock, Tom [1 ]
Mayer, Andreas [1 ]
Chandran, Aneesh [1 ]
Rosenheim, Joshua [1 ]
Whelan, Matthew [1 ]
Yao, Xuan [3 ]
Liu, Guihai [3 ]
Felce, Suet Ling [3 ]
Dong, Tao [2 ,3 ]
Mentzer, Alexander J. [4 ]
Knight, Julian C. [3 ,4 ]
Balloux, Francois [5 ]
Greenstein, Erez [6 ]
Reich-Zeliger, Shlomit [6 ]
Pade, Corinna [7 ]
Gibbons, Joseph M. [7 ]
Semper, Amanda [8 ]
Brooks, Tim [8 ]
Otter, Ashley [8 ]
Altmann, Daniel M. [9 ]
Boyton, Rosemary J. [10 ,11 ]
Maini, Mala K. [1 ]
McKnight, Aine [7 ]
Manisty, Charlotte [12 ]
Treibel, Thomas A. [12 ]
Moon, James C. [12 ]
COVIDsortium Investigators, COVIDsortium Investigators
Noursadeghi, Mahdad [1 ]
Chain, Benny [1 ]
机构
[1] UCL, Div Infect & Immun, London WC1E 6BT, England
[2] Univ Oxford, MRC Weatherall Inst Mol Med, Radcliffe Dept Med, MRC Human Immunol Unit, Oxford, England
[3] Univ Oxford, Oxford Inst COI, Chinese Acad Med Sci CAMS, Oxford, England
[4] Univ Oxford, Wellcome Ctr Human Genet, Oxford, England
[5] UCL, UCL Genet Inst, London WC1E 6BT, England
[6] Weizmann Inst Sci, Dept Syst Immunol, IL-7610001 Rehovot, Israel
[7] Queen Mary Univ London, Blizard Inst, Barts & London Sch Med & Dent, London E1 4NS, England
[8] UK Hlth Secur Agcy, Salisbury SP4 0JG, England
[9] Imperial Coll London, Dept Immunol & Inflammat, London SW7 2BX, England
[10] Imperial Coll London, Dept Infect Dis, London W12 0NN, England
[11] Guys & St Thomas NHS Fdn Trust, Royal Brompton Hosp, Lung Div, London, England
[12] UCL, Inst Cardiovasc Sci, London WC1E 6BT, England
基金
“创新英国”项目; 美国国家卫生研究院; 欧盟地平线“2020”; 英国惠康基金; 英国医学研究理事会;
关键词
LYMPHOCYTIC CHORIOMENINGITIS VIRUS; DYNAMICS; CD4(+); SEQUENCES; RESPONSES; DISEASE;
D O I
10.1016/j.isci.2023.106937
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
T cell responses precede antibody and may provide early control of infection. We analyzed the clonal basis of this rapid response following SARS-COV-2 infection. We applied T cell receptor (TCR) sequencing to define the trajectories of individ-ual T cell clones immediately. In SARS-COV-2 PCR+ individuals, a wave of TCRs strongly but transiently expand, frequently peaking the same week as the first positive PCR test. These expanding TCR CDR3s were enriched for sequences functionally annotated as SARS-COV-2 specific. Epitopes recognized by the ex-panding TCRs were highly conserved between SARS-COV-2 strains but not with circulating human coronaviruses. Many expanding CDR3s were present at high frequency in pre-pandemic repertoires. Early response TCRs specific for lympho-cytic choriomeningitis virus epitopes were also found at high frequency in the preinfection naive repertoire. High-frequency naive precursors may allow the T cell response to respond rapidly during the crucial early phases of acute viral infection.
引用
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页数:21
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