Cell-type memory in a single-cell eukaryote requires the continuous presence of a specific transcription regulator

被引:2
|
作者
Lee, Chien -Der [1 ]
Ziv, Naomi [1 ]
Johnson, Alexander D. [1 ]
机构
[1] Univ Calif San Francisco, Dept Microbiol & Immunol, San Francisco, CA 94158 USA
关键词
cell-type memory; transcriptional feedback loop; Candida albicans; degron; CANDIDA-ALBICANS; MASTER REGULATOR; DEGRON SYSTEM; FREQUENCY; PROTEINS; WOR1;
D O I
10.1073/pnas.2220568120
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
A fundamental question in biology is how a eukaryotic cell type can be stably main-tained through many rounds of DNA replication and cell division. In this paper, we investigate this question in a fungal species, Candida albicans, where two different cells types (white and opaque) arise from the same genome. Once formed, each cell type is stable for thousands of generations. Here, we investigate the mechanisms underlying opaque cell "memory." Using an auxin-mediated degradation system, we rapidly removed Wor1, the primary transcription activator of the opaque state and, using a variety of methods, determined how long cells can maintain the opaque state. Within approximately 1 h of Wor1 destruction, opaque cells irreversibly lose their memory and switch to the white cell state. This observation rules out several competing models for cell memory and demonstrates that the continuous presence of Wor1 is needed to maintain the opaque cell state-even across a single cell division cycle. We also provide evidence for a threshold concentration of Wor1 in opaque cells, below which opaque cells irreversibly switch to white cells. Finally, we provide a detailed description of the gene expression changes that occur during this switch in cell types.
引用
收藏
页数:6
相关论文
共 50 条
  • [21] Single-cell Transcriptomics Reveals Cell-type Specific Transcriptional Responses In Murine Embryonic Hearts Exposed To Maternal Hyperglycemia
    Manivannan, Sathiyanarayanan
    Mansfield, Corrin R.
    Zhang, Xinmin
    Kodigepalli, Madhav Karthik
    Majumdar, Uddalak
    Garg, Vidu
    Basu, Madhumita
    CIRCULATION RESEARCH, 2022, 131
  • [22] Single-Cell RNA-Sequencing From Mouse Incisor Reveals Dental Epithelial Cell-Type Specific Genes
    Chiba, Yuta
    Saito, Kan
    Martin, Daniel
    Boger, Erich T.
    Rhodes, Craig
    Yoshizaki, Keigo
    Nakamura, Takashi
    Yamada, Aya
    Morell, Robert J.
    Yamada, Yoshihiko
    Fukumoto, Satoshi
    FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 2020, 8
  • [23] Cell-type specific insights into the pathobiology of advanced diabetic retinopathy using single-cell transcriptome analysis of the Akimba retina
    Van Hove, Inge
    Porcu, Michael
    De Groef, Lies
    Hu, Tjing-Tjing
    Beets, Karen
    Van Bergen, Tine
    Boeckx, Bram
    Lambrechts, Diether
    Moons, Lieve
    Feyen, Jean H. M.
    ACTA OPHTHALMOLOGICA, 2019, 97
  • [24] Single-cell sequencing of rotavirus-infected intestinal epithelium reveals cell-type specific epithelial repair and tuft cell infection
    Bomidi, Carolyn
    Robertson, Matthew
    Coarfa, Cristian
    Estes, Mary K.
    Blutt, Sarah E.
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2021, 118 (45)
  • [25] SCOTv2: Single-Cell Multiomic Alignment with Disproportionate Cell-Type Representation
    Demetci, Pinar
    Santorella, Rebecca
    Chakravarthy, Manav
    Sandstede, Bjorn
    Singh, Ritambhara
    JOURNAL OF COMPUTATIONAL BIOLOGY, 2022, 29 (11) : 1213 - 1228
  • [26] Identifying transcription factors with cell-type specific DNA binding signatures
    Awdeh, Aseel
    Turcotte, Marcel
    Perkins, Theodore J.
    BMC GENOMICS, 2024, 25 (01):
  • [27] CSI-Microbes: Identifying cell-type specific intracellular microbes from single-cell RNA-seq data
    Robinson, Welles
    Schischlik, Fiorella
    Gertz, E. Michael
    Lee, Joo S.
    Zhu, Kaiyuan
    Sahinalp, S. Cenk
    Patro, Rob
    Leiserson, Mark D.
    Schaffer, Alejandro A.
    Ruppin, Eytan
    CANCER RESEARCH, 2022, 82 (12)
  • [28] A Complex Hierarchy of Avoidance Behaviors in a Single-Cell Eukaryote
    Dexter, Joseph P.
    Prabakaran, Sudhakaran
    Gunawardena, Jeremy
    CURRENT BIOLOGY, 2019, 29 (24) : 4323 - +
  • [29] Root stem cell homeostasis in Arabidopsis involves cell-type specific transcription factor complexes
    Strotmann, Vivien, I
    Garcia-Gomez, Monica L.
    Stahl, Yvonne
    EMBO REPORTS, 2025,
  • [30] Review of single-cell RNA-seq data clustering for cell-type identification and characterization
    Zhang, Shixiong
    Li, Xiangtao
    Lin, Jiecong
    Lin, Qiuzhen
    Wong, Ka-Chun
    RNA, 2023, 29 (05) : 517 - 530