Out-of-distribution generalization for segmentation of lymph node metastasis in breast cancer

被引:0
|
作者
Varnava, Yiannis [1 ]
Jakate, Kiran [9 ]
Garnett, Richard [1 ]
Androutsos, Dimitrios [1 ]
Tyrrell, Pascal N. [2 ,3 ,4 ]
Khademi, April [1 ,2 ,4 ,5 ,6 ,7 ,8 ]
机构
[1] Toronto Metropolitan Univ, Dept Elect Comp & Biomed Engn, Toronto, ON, Canada
[2] Univ Toronto, Dept Med Imaging, Toronto, ON, Canada
[3] Univ Toronto, Dept Stat Sci, Toronto, ON, Canada
[4] Univ Toronto, Inst Med Sci, Toronto, ON, Canada
[5] St Michaels Hosp, Keenan Res Ctr Biomed Sci, Unity Hlth Toronto, Toronto, ON, Canada
[6] St Michaels Hosp, Inst Biomed Engn Sci Tech iBEST, Partnership St, Toronto, ON, Canada
[7] Toronto Metropolitan Univ, Toronto, ON, Canada
[8] Vector Inst Artificial Intelligence, Toronto, ON, Canada
[9] Unity Hlth Toronto, Toronto, ON, Canada
来源
SCIENTIFIC REPORTS | 2025年 / 15卷 / 01期
关键词
Histopathology; Lymph node; Breast cancer; Deep learning; Segmentation; Generalization; NORMALIZATION; PATHOLOGISTS; EQUIVALENCE; SEPARATION; TESTS;
D O I
10.1038/s41598-024-80495-y
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Pathology provides the definitive diagnosis, and Artificial Intelligence (AI) tools are poised to improve accuracy, inter-rater agreement, and turn-around time (TAT) of pathologists, leading to improved quality of care. A high value clinical application is the grading of Lymph Node Metastasis (LNM) which is used for breast cancer staging and guides treatment decisions. A challenge of implementing AI tools widely for LNM classification is domain shift, where Out-of-Distribution (OOD) data has a different distribution than the In-Distribution (ID) data used to train the model, resulting in a drop in performance in OOD data. This work proposes a novel clustering and sampling method to automatically curate training datasets in an unsupervised manner with the aim of improving model generalization abilities. To evaluate the generalization performance of the proposed models, we applied a novel use of the Two One-sided Tests (TOST) method. This method examines whether the performance on ID and OOD data is equivalent, serving as a proxy for generalization. We provide the first evidence for computing equivalence margins that are data-dependent, which reduces subjectivity. The proposed framework shows the ensembled models constructed from models that generalized across both tumor and normal patches enhanced performance, achieving an F1 score of 0.81 for LNM classification on unseen ID and OOD samples. Interactive viewing of slide-level segmentations can be accessed on PathcoreFlow (TM) through https://web.pathcore.com/folder/18555?s=QTJVHJuhrfe5. Segmentation models are available at https://github.com/IAMLAB-Ryerson/OOD-Generalization-LNM.
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收藏
页数:16
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