Ideonella margarita sp. nov., Ideonella lacteola sp. nov., Pseudaquabacterium inlustre sp. nov. and Pseudaquabacterium rugosum sp. nov., isolated from streams in China and reexamining the taxonomic status of all the genera within the

被引:0
|
作者
Lu, Huibin [1 ]
Chen, Li [1 ]
机构
[1] Yunnan Normal Univ, Fac Geog, Yunnan Key Lab Plateau Geog Proc & Environm Change, Kunming 650500, Peoples R China
关键词
Aquabacterium; Ideonella; streams; FRESH-WATER; SEQUENCES; QUALITY;
D O I
10.1099/ijsem.0.006495
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Four Gram- stain- negative, aerobic, rod- shaped and motile strains (LYT19WT, T , DXS22WT, T , DXS29WT T and BYS139WT) T ) were isolated from streams in China. All four strains showed highest 16S rRNA gene sequence similarities to the species of genus Ideonella. . The calculated average nucleotide identity, digital DNA-DNA hybridization and average amino acid identity values among strains LYT19WT, T , DXS22WT, T , DXS29WT, T , BYS139WT T and other closely related strains were less than 79.5, 22.5 and 74.0%, respectively, indicating that each of the four strains should represent an independent novel species. The further reconstructed phylogenomic tree showed that strains LYT19WT T and DXS29WT T clustered closely with Ideonella strains, but strains DXS22WT T and BYS139WT T formed an independent clade with Aquabacterium terrae and Aquabacterium pictum. . Comparing with other Aqua- bacterium species, A. terrae and A. pictum harboured distinct physiological and genetic characteristics, so it was reasonable to propose a novel genus Pseudaquabacterium to accommodate A. terrae, , A. pictum, , DXS22WT T and BYS139WT. T . The major fatty acids of the four strains contained C 16:0 , summed feature 3 ( C 16: 1 omega 6 c and/or C 16:1 omega 7 c ) and summed feature 8 ( C 18: 1 omega 6 c and/ or C 18: 1 omega 7 c ). The predominant polar lipids were phosphatidylglycerol, phosphatidylethanolamine, diphosphatidylglycerol and one unidentified aminophospholipid. Combining above descriptions, strains LYT19WT T and DXS29WT T should represent two novel species of the genus Ideonella, , for which the names Ideonella margarita sp. nov. (type strain LYT19WT=GDMCC T =GDMCC 1.3205T=KCTC T =KCTC 92545T) T ) and Ideonella lacteola sp. nov. (type strain DXS29WT=GDMCC T =GDMCC 1.3207T=KCTC T =KCTC 92547T) T ) are proposed, respectively. Strains DXS22WT T and BYS139WT T should represent two novel species of the new genus Pseudaquabacterium, , for which the names Pseudaquabacterium inlustre sp. nov. (type strain DXS22WT=GDMCC T =GDMCC 1.3206T=KCTC T =KCTC 92546T) T ) and Pseudaquabacterium rugosum sp. nov. (type strain BYS139WT=GDMCC T =GDMCC 1.3208T=KCTC T =KCTC 92548T) T ) are proposed, respectively.
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