Evaluation of plasma-derived extracellular vesicles miRNAs and their connection with hippocampal mRNAs in alcohol use disorder

被引:1
|
作者
Wang, Jie-quan [1 ,2 ,3 ,4 ]
Liang, Jun [1 ,2 ,3 ,4 ]
Wang, Jin-liang [1 ,2 ,3 ,4 ]
Shan, Feng [1 ,2 ,3 ,4 ]
Cao, Yin [1 ,2 ,3 ,4 ]
Zhou, Xuan [1 ,2 ,3 ,4 ]
Yan, Chun-Yu [1 ,2 ,3 ,4 ]
Xia, Qing-rong [1 ,2 ,3 ,4 ]
Liu, Ya-ru [5 ,6 ]
机构
[1] Anhui Med Univ, Affiliated Psychol Hosp, Dept Pharm, Hefei 230000, Anhui, Peoples R China
[2] Anhui Mental Hlth Ctr, Psychopharmacol Res Lab, Hefei 230000, Peoples R China
[3] Hefei Fourth Peoples Hosp, Dept Pharm, Hefei 230000, Peoples R China
[4] Anhui Clin Res Ctr Mental Disorders, Hefei 230000, Peoples R China
[5] Anhui Med Univ, Affiliated Hosp 1, Dept Pharm, Hefei 230001, Anhui, Peoples R China
[6] State Adm Tradit Chinese Med, Grade Pharmaceut Chem Lab 3, Hefei 230001, Peoples R China
基金
中国国家自然科学基金;
关键词
Alcohol use disorder; Plasma -derived sEVs; Small RNA sequencing; Machine learning; Noninvasive biomarkers; miRNA-mRNA network;
D O I
10.1016/j.lfs.2024.122820
中图分类号
R-3 [医学研究方法]; R3 [基础医学];
学科分类号
1001 ;
摘要
Alcohol use disorder (AUD) is a common mental illness with high morbidity and disability. The discovery of laboratory biomarkers has progressed slowly, resulting in suboptimal diagnosis and treatment of AUD. This study aimed to identify promising biomarkers, as well as the potential miRNA-mRNA networks associated with AUD pathogenesis. RNA sequencing was performed on plasma -derived small extracellular vesicles (sEVs) from AUD patients and healthy controls (HCs) to harvest miRNAs expression profiles. Machine learning (ML) models were built to screen characteristic miRNAs, whose target mRNAs were analyzed using TargetScan, miRanda and miRDB databases. Gene Expression Omnibus (GEO) datasets (GSE181804 and GSE180722) providing postmortem hippocampal gene expression profiles of AUD subjects were mined. A total of 247 differentially expressed (DE) plasma -derived sEVs miRNAs and 122 DE hippocampal mRNAs were obtained. Then, 22 overlapping sEVs miRNAs with high importance scores were gained by intersecting 5 ML models. As a result, we established a putative sEVs miRNA-hippocampal mRNA network that can effectively distinguish AUD patients from HCs. In conclusion, we proposed 5 AUD-representative sEVs miRNAs (hsa-miR-144-5p, hsa-miR-182-5p, hsa-miR-1425p, hsa-miR-7-5p, and hsa-miR-15b-5p) that may participate in the pathogenesis of AUD by modulating downstream target hippocampal genes. These findings may provide novel insights into the diagnosis and treatment of AUD.
引用
收藏
页数:13
相关论文
共 50 条
  • [31] Plasma-Derived Extracellular Vesicles Circular RNAs Serve as Biomarkers for Breast Cancer Diagnosis
    Lin, Li
    Cai, Geng-Xi
    Zhai, Xiang-Ming
    Yang, Xue-Xi
    Li, Min
    Li, Kun
    Zhou, Chun-Lian
    Liu, Tian-Cai
    Han, Bo-Wei
    Liu, Zi-Jia
    Chen, Mei-Qi
    Ye, Guo-Lin
    Wu, Ying-Song
    Guo, Zhi-Wei
    FRONTIERS IN ONCOLOGY, 2021, 11
  • [32] Platelet-rich plasma-derived extracellular vesicles: A superior alternative in regenerative medicine?
    Wu, Jiuping
    Piao, Yingxin
    Liu, Qinyi
    Yang, Xiaoyu
    CELL PROLIFERATION, 2021, 54 (12)
  • [33] Correlation of Pathogenic Somatic Mutation Presence in Tumor Tissue and Plasma-Derived Extracellular Vesicles
    Blohm, T.
    Mast, A.
    LaBonte, A.
    Havranek, K.
    JOURNAL OF MOLECULAR DIAGNOSTICS, 2023, 25 (11): : S123 - S124
  • [34] Plasma-derived extracellular vesicles yield predictive markers of cranial irradiation exposure in mice
    Hinzman, Charles P.
    Baulch, Janet E.
    Mehta, Khyati Y.
    Girgis, Michael
    Bansal, Shivani
    Gill, Kirandeep
    Li, Yaoxiang
    Limon, Charles L.
    Cheema, Amrita K.
    SCIENTIFIC REPORTS, 2019, 9 (1)
  • [35] Characterization and microRNA quantification of plasma-derived extracellular vesicles in patients with Plasmodium knowlesi infection
    Khammanee, Thunchanok
    Nokchan, Natakorn
    Molika, Piyatida
    Buncherd, Hansuk
    Srinoun, Kanitta
    Tansila, Natta
    Saechan, Charinrat
    Praparatana, Rachanida
    Sawangjaroen, Nongyao
    Jitueakul, Suwannee
    Ratcha, Chatree
    Weeraphan, Churat
    Svasti, Jisnuson
    Navakanitworakul, Raphatphorn
    Thanapongpichat, Supinya
    PARASITOLOGY, 2025,
  • [36] Discovery of lipid profiles in plasma-derived extracellular vesicles as biomarkers for breast cancer diagnosis
    Liu, Lin
    Kawashima, Masahiro
    Sugimoto, Masahiro
    Sonomura, Kazuhiro
    Pu, Fengling
    Li, Wei
    Takeda, Masashi
    Goto, Takayuki
    Kawaguchi, Kosuke
    Sato, Taka-Aki
    Toi, Masakazu
    CANCER SCIENCE, 2023, 114 (10) : 4020 - 4031
  • [37] Plasma-derived Extracellular Vesicles Induced STING-mediated Proinflammatory Effects in Dermatomyositis
    Li, Yubin
    Bax, Christina
    Patel, Jay
    Ravishankar, Adarsh
    Desai, Krisha
    Zeidi, Majid
    Bashir, Muhammad
    Werth, Victoria
    ARTHRITIS & RHEUMATOLOGY, 2020, 72
  • [38] Protein cargo of plasma-derived extracellular vesicles drives innate mediated inflammation in dermatomyositis
    Baniel, A.
    Ogawa-Momohara, M.
    Rachita, P.
    Kleitsch, J.
    Liu, M.
    Werth, V. P.
    JOURNAL OF INVESTIGATIVE DERMATOLOGY, 2023, 143 (05) : S5 - S5
  • [39] An Abnormal Host/Microbiomes Signature of Plasma-Derived Extracellular Vesicles Is Associated to Polycythemia Vera
    Barone, Monica
    Barone, Martina
    Ricci, Francesca
    Auteri, Giuseppe
    Corradi, Giulia
    Fabbri, Francesco
    Papa, Valentina
    Bandini, Erika
    Cenacchi, Giovanna
    Tazzari, Pier Luigi
    Vianelli, Nicola
    Turroni, Silvia
    Cavo, Michele
    Palandri, Francesca
    Candela, Marco
    Catani, Lucia
    FRONTIERS IN ONCOLOGY, 2021, 11
  • [40] IDENTIFICATION OF MICRORNAS IN PLASMA-DERIVED EXTRACELLULAR VESICLES AS DIAGNOSTIC AND MONITORING BIOMARKERS FOR EOSINOPHILIC ESOPHAGITIS
    Grueso-Navarro, Elena
    Rodriguez-Alcolado, Leticia
    Arias-Gonzalez, Laura
    Navarro, Pilar
    Gonzalez-Cervera, Jesus
    Lucendo, Alfredo J.
    Laserna-Mendieta, Emilio J.
    GASTROENTEROLOGY, 2024, 166 (05) : S724 - S725