On the Sufficiency of Pairwise Interactions in Maximum Entropy Models of Networks

被引:0
|
作者
Lina Merchan
Ilya Nemenman
机构
[1] Savannah State University,Department of Engineering Technology
[2] Emory University,Department of Physics
[3] Emory University,Departments of Physics and Biology
来源
关键词
Collective dynamics; -spin models; Numerical simulations;
D O I
暂无
中图分类号
学科分类号
摘要
Biological information processing networks consist of many components, which are coupled by an even larger number of complex multivariate interactions. However, analyses of data sets from fields as diverse as neuroscience, molecular biology, and behavior have reported that observed statistics of states of some biological networks can be approximated well by maximum entropy models with only pairwise interactions among the components. Based on simulations of random Ising spin networks with p-spin (p>2\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$p>2$$\end{document}) interactions, here we argue that this reduction in complexity can be thought of as a natural property of densely interacting networks in certain regimes, and not necessarily as a special property of living systems. By connecting our analysis to the theory of random constraint satisfaction problems, we suggest a reason for why some biological systems may operate in this regime.
引用
收藏
页码:1294 / 1308
页数:14
相关论文
共 50 条
  • [21] Maximum dynamic entropy models
    Asadi, M
    Ebrahimi, N
    Hamedani, GG
    Soofi, ES
    JOURNAL OF APPLIED PROBABILITY, 2004, 41 (02) : 379 - 390
  • [22] Pairwise Maximum Entropy Models for Studying Large Biological Systems: When They Can Work and When They Can't
    Roudi, Yasser
    Nirenberg, Sheila
    Latham, Peter E.
    PLOS COMPUTATIONAL BIOLOGY, 2009, 5 (05)
  • [23] Maximum Entropy Exploration in Contextual Bandits with Neural Networks and Energy Based Models
    Elwood, Adam
    Leonardi, Marco
    Mohamed, Ashraf
    Rozza, Alessandro
    ENTROPY, 2023, 25 (02)
  • [24] SUFFICIENCY AND PAIRWISE SUFFICIENCY IN STANDARD BOREL SPACES .2.
    RAMAMOORTHI, RV
    OSAKA JOURNAL OF MATHEMATICS, 1982, 19 (03) : 577 - 586
  • [25] Networks beyond pairwise interactions: Structure and dynamics
    Battiston, Federico
    Cencetti, Giulia
    Iacopini, Iacopo
    Latora, Vito
    Lucas, Maxime
    Patania, Alice
    Young, Jean-Gabriel
    Petri, Giovanni
    PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS, 2020, 874 : 1 - 92
  • [26] Constrained maximum entropy models to select genotype interactions associated with censored failure times
    Yang, Aotian
    Miller, David
    Pan, Qing
    JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 2018, 16 (06)
  • [27] Maximum Entropy Analysis of Flow Networks
    Niven, Robert K.
    Abel, Markus
    Schlegel, Michael
    Waldrip, Steven H.
    BAYESIAN INFERENCE AND MAXIMUM ENTROPY METHODS IN SCIENCE AND ENGINEERING, MAXENT 2013, 2014, 1636 : 159 - 164
  • [28] Maximum Entropy Discrimination Markov Networks
    Zhu, Jun
    Xing, Eric P.
    JOURNAL OF MACHINE LEARNING RESEARCH, 2009, 10 : 2531 - 2569
  • [29] Maximum Entropy Analysis of Transport Networks
    Waldrip, Steven H.
    Niven, Robert K.
    Abel, Markus
    Schlegel, Michael
    BAYESIAN INFERENCE AND MAXIMUM ENTROPY METHODS IN SCIENCE AND ENGINEERING (MAXENT 2016), 2017, 1853
  • [30] Maximum entropy discrimination markov networks
    Zhu, Jun
    Xing, Eric P.
    Journal of Machine Learning Research, 2009, 10 : 2531 - 2569