Draft genome and description of Merdibacter massiliensis gen.nov., sp. nov., a new bacterium genus isolated from the human ileum

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作者
Hussein Anani
Rita Abou Abdallah
Nisrine Chelkha
Anthony Fontanini
Davide Ricaboni
Morgane Mailhe
Didier Raoult
Pierre-Edouard Fournier
机构
[1] Service de Santé des Armées,Aix Marseille Univ, Institut de Recherche pour le Développement (IRD)
[2] AP-HM,Aix
[3] UMR Vecteurs Infections Tropicales et Méditerranéennes (VITROME),Marseille Université, Institut de Recherche pour le Développement (IRD)
[4] Institut Hospitalo-Universitaire Méditerranée Infection,Special Infectious Agents Unit, King Fahd Medical Research Center
[5] UMR Microbes Evolution Phylogeny and Infections (MEPHI),undefined
[6] Institut Hospitalo-Universitaire Méditerranée-Infection,undefined
[7] King Abdulaziz University,undefined
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Scientific Reports | / 9卷
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摘要
We used phenotypic, genomic and phylogenetic information following the taxono-genomics approach to demonstrate that strain Marseille–P3254, isolated from an ileal sample of a 76-year old woman who underwent upper and lower digestive tract endoscopy for esophagitis and colonic polyp, is representative of a novel bacterial genus within the family Erysipelotrichaceae in the phylum Firmicutes. It is an anaerobic Gram-negative bacterium without catalase and oxidase activities. The genome of strain Marseille–P3254 is 2,468,496-bp long with a 40.1% G + C content. This new bacterium is most closely related to Eubacterium dolichum, with which it shares 90.7% 16S rRNA sequence similarity. In addition, genomic comparison using the digital DNA–DNA hybridization and OrthoANI analyses between the novel organism and the E. dolichum type strain revealed identities of 25.2 and 68.91%, respectively. The major fatty acids were C16: 0, C18: 1n9 and C18: 0. Based on these data, we propose the creation of the new genus Merdibacter gen. nov., with strain Marseille-P3254T (=CSUR P3254 = DSM 103534) being the type strain of the new species Merdibacter massiliensis gen. nov., sp. nov.
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