Long-read PacBio genome sequencing of four environmental saprophytic Sporothrix species spanning the pathogenic clade

被引:0
|
作者
Weian Du
Domenico Giosa
Junkang Wei
Letterio Giuffrè
Ge Shi
Lamya El Aamri
Enrico D’Alessandro
Majida Hafidi
Sybren de Hoog
Orazio Romeo
Huaiqiu Huang
机构
[1] the Third Affiliated Hospital of Sun Yat-sen University,Department of Dermatology and Venereology
[2] University of Messina,Department of Chemical, Biological, Pharmaceutical and Environmental Sciences
[3] School of Pharmaceutical Sciences,Medical Cosmetic and Plastic Surgery Center
[4] Sun Yat-sen University,Department of Biology
[5] The Sixth Affiliated Hospital of Sun Yat-sen University,Department of Veterinary Sciences
[6] Moulay Ismail University,undefined
[7] University of Messina,undefined
[8] Center of Expertise in Mycology of Radboud University Medical Center / Canisius Wilhelmina Hospital,undefined
来源
BMC Genomics | / 23卷
关键词
Sporotrichosis; SMRT PacBio sequencing; Long-read sequencing; De novo assembly; Comparative genomics;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [21] A transcriptome atlas of rabbit revealed by PacBio single-molecule long-read sequencing
    Shi-Yi Chen
    Feilong Deng
    Xianbo Jia
    Cao Li
    Song-Jia Lai
    Scientific Reports, 7
  • [22] Enablement of long-read targeted sequencing panels using Twist hybrid capture and PacBio HiFi sequencing
    Kingan, Sarah
    Harting, John
    Hon, Ting
    Tsai, Yu-Chih
    McLaughlin, Ian
    Ziegle, Janet
    Han, Tina
    Arbiza, Leonardo
    Kloet, Susan
    Busscher, Loes
    Henno, Geoff
    Lee, Edd
    Gonzaludo, Nina
    EUROPEAN JOURNAL OF HUMAN GENETICS, 2023, 31 : 585 - 585
  • [23] PacBio Revio and ONT PromethION long-read sequencing in SV calling and variant phasing
    Tomio, Giancarlo
    Meienberg, Janine
    Siegenthaler, Timo
    Nicholson, Pamela
    Krebs, Stefan
    Matyas, Gabor
    EUROPEAN JOURNAL OF HUMAN GENETICS, 2024, 32 : 1788 - 1788
  • [24] Targeted sequencing analysis pipeline for species identification of human pathogenic fungi using long-read nanopore sequencing
    Langsiri, Nattapong
    Worasilchai, Navaporn
    Irinyi, Laszlo
    Jenjaroenpun, Piroon
    Wongsurawat, Thidathip
    Luangsa-ard, Janet Jennifer
    Meyer, Wieland
    Chindamporn, Ariya
    IMA FUNGUS, 2023, 14 (01)
  • [25] Targeted sequencing analysis pipeline for species identification of human pathogenic fungi using long-read nanopore sequencing
    Nattapong Langsiri
    Navaporn Worasilchai
    Laszlo Irinyi
    Piroon Jenjaroenpun
    Thidathip Wongsurawat
    Janet Jennifer Luangsa-ard
    Wieland Meyer
    Ariya Chindamporn
    IMA Fungus, 14
  • [26] Direct Comparative Analysis of a Pharmacogenomics Panel with PacBio Hifi® Long-Read and Illumina Short-Read Sequencing
    Barthelemy, David
    Belmonte, Elodie
    Di Pilla, Laurie
    Bardel, Claire
    Duport, Eve
    Gautier, Veronique
    Payen, Lea
    JOURNAL OF PERSONALIZED MEDICINE, 2023, 13 (12):
  • [27] Comparison of long-read methods for sequencing and assembly of a plant genome
    Murigneux, Valentine
    Rai, Subash Kumar
    Furtado, Agnelo
    Bruxner, Timothy J. C.
    Tian, Wei
    Harliwong, Ivon
    Wei, Hanmin
    Yang, Bicheng
    Ye, Qianyu
    Anderson, Ellis
    Mao, Qing
    Drmanac, Radoje
    Wang, Ou
    Peters, Brock A.
    Xu, Mengyang
    Wu, Pei
    Topp, Bruce
    Coin, Lachlan J. M.
    Henry, Robert J.
    GIGASCIENCE, 2020, 9 (12):
  • [28] Long-read sequencing of the zebrafish genome reorganizes genomic architecture
    Chernyavskaya, Yelena
    Zhang, Xiaofei
    Liu, Jinze
    Blackburn, Jessica
    BMC GENOMICS, 2022, 23 (01)
  • [29] Expanding an expanded genome: long-read sequencing of Trypanosoma cruzi
    Berna, Luisa
    Rodriguez, Matias
    Laura Chiribao, Maria
    Parodi-Talice, Adriana
    Pita, Sebastian
    Rijo, Gaston
    Alvarez-Valin, Fernando
    Robello, Carlos
    MICROBIAL GENOMICS, 2018, 4 (05):
  • [30] Long-read genome sequencing for the molecular diagnosis of neurodevelopmental disorders
    Hiatt, Susan M.
    Lawlor, James M. J.
    Handley, Lori H.
    Ramaker, Ryne C.
    Rogers, Brianne B.
    Partridge, E. Christopher
    Boston, Lori Beth
    Williams, Melissa
    Plott, Christopher B.
    Jenkins, Jerry
    Gray, David E.
    Holt, James M.
    Bowling, Kevin M.
    Bebin, E. Martina
    Grimwood, Jane
    Schmutz, Jeremy
    Cooper, Gregory M.
    HUMAN GENETICS AND GENOMICS ADVANCES, 2021, 2 (02):