Long-read PacBio genome sequencing of four environmental saprophytic Sporothrix species spanning the pathogenic clade

被引:0
|
作者
Weian Du
Domenico Giosa
Junkang Wei
Letterio Giuffrè
Ge Shi
Lamya El Aamri
Enrico D’Alessandro
Majida Hafidi
Sybren de Hoog
Orazio Romeo
Huaiqiu Huang
机构
[1] the Third Affiliated Hospital of Sun Yat-sen University,Department of Dermatology and Venereology
[2] University of Messina,Department of Chemical, Biological, Pharmaceutical and Environmental Sciences
[3] School of Pharmaceutical Sciences,Medical Cosmetic and Plastic Surgery Center
[4] Sun Yat-sen University,Department of Biology
[5] The Sixth Affiliated Hospital of Sun Yat-sen University,Department of Veterinary Sciences
[6] Moulay Ismail University,undefined
[7] University of Messina,undefined
[8] Center of Expertise in Mycology of Radboud University Medical Center / Canisius Wilhelmina Hospital,undefined
来源
BMC Genomics | / 23卷
关键词
Sporotrichosis; SMRT PacBio sequencing; Long-read sequencing; De novo assembly; Comparative genomics;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [1] Long-read PacBio genome sequencing of four environmental saprophytic Sporothrix species spanning the pathogenic clade
    Du, Weian
    Giosa, Domenico
    Wei, Junkang
    Giuffre, Letterio
    Shi, Ge
    El Aamri, Lamya
    D'Alessandro, Enrico
    Hafidi, Majida
    de Hoog, Sybren
    Romeo, Orazio
    Huang, Huaiqiu
    BMC GENOMICS, 2022, 23 (01)
  • [2] Genome analysis of Zoysia japonica 'Yaji' cultivar using PacBio long-read sequencing
    Yang, Dae-Hwa
    Jeong, Ok-Cheol
    Sun, Hyeon-Jin
    Kang, Hong-Gyu
    Lee, Hyo-Yeon
    PLANT BIOTECHNOLOGY REPORTS, 2023, 17 (02) : 275 - 283
  • [3] Genome analysis of Zoysia japonica ‘Yaji’ cultivar using PacBio long-read sequencing
    Dae-Hwa Yang
    Ok-Cheol Jeong
    Hyeon-Jin Sun
    Hong-Gyu Kang
    Hyo-Yeon Lee
    Plant Biotechnology Reports, 2023, 17 : 275 - 283
  • [4] Genome sequencing using long-read sequencing
    McEwen, Juan Guillermo
    Gomez, Oscar Mauricio
    REVISTA DE LA ACADEMIA COLOMBIANA DE CIENCIAS EXACTAS FISICAS Y NATURALES, 2023, 47 (183): : 439 - 444
  • [5] Revealing the transcriptomic complexity of switchgrass by PacBio long-read sequencing
    Chunman Zuo
    Matthew Blow
    Avinash Sreedasyam
    Rita C. Kuo
    Govindarajan Kunde Ramamoorthy
    Ivone Torres-Jerez
    Guifen Li
    Mei Wang
    David Dilworth
    Kerrie Barry
    Michael Udvardi
    Jeremy Schmutz
    Yuhong Tang
    Ying Xu
    Biotechnology for Biofuels, 11
  • [6] Assessment of episignature analysis using PacBio long-read sequencing
    Ivashchenko, Veronique
    Hampstead, Juliet
    Derks, Ronny
    Den Ouden, Amber
    Khazeeva, Gelana
    Van den Heuvel, Simone
    Timmermans, Raoul
    Galbany, Jordi Corominas
    Pfundt, Rolph
    Hofste, Tom
    Yntema, Helger
    Vissers, Lisenka
    Hoischen, Alexander
    Gilissen, Christian
    EUROPEAN JOURNAL OF HUMAN GENETICS, 2024, 32 : 1777 - 1778
  • [7] Revealing the transcriptomic complexity of switchgrass by PacBio long-read sequencing
    Zuo, Chunman
    Blow, Matthew
    Sreedasyam, Avinash
    Kuo, Rita C.
    Ramamoorthy, Govindarajan Kunde
    Torres-Jerez, Ivone
    Li, Guifen
    Wang, Mei
    Dilworth, David
    Barry, Kerrie
    Udvardi, Michael
    Schmutz, Jeremy
    Tang, Yuhong
    Xu, Ying
    BIOTECHNOLOGY FOR BIOFUELS, 2018, 11
  • [8] Exploring the genome and transcriptome of the cave nectar bat Eonycteris spelaea with PacBio long-read sequencing
    Wen, Ming
    Ng, Justin H. J.
    Zhu, Feng
    Chionh, Yok Teng
    Chia, Wan Ni
    Mendenhall, Ian H.
    Lee, Benjamin P. Y-H.
    Irving, Aaron T.
    Wang, Lin-Fa
    GIGASCIENCE, 2018, 7 (10):
  • [9] Long-Read Annotation: Automated Eukaryotic Genome Annotation Based on Long-Read cDNA Sequencing
    Cook, David E.
    Valle-Inclan, Jose Espejo
    Pajoro, Alice
    Rovenich, Hanna
    Thomma, Bart P. H. J.
    Faino, Luigi
    PLANT PHYSIOLOGY, 2019, 179 (01) : 38 - 54
  • [10] Detection of four isomers of the human cytomegalovirus genome using nanopore long-read sequencing
    Nanamiya, Hideaki
    Tanaka, Daisuke
    Hiyama, Gen
    Isogai, Takao
    Watanabe, Shinya
    VIRUS GENES, 2024, 60 (04) : 377 - 384