Cell-type specificity of ChIP-predicted transcription factor binding sites

被引：0
|
作者：
Tony Håndstad
Morten Rye
Rok Močnik
Finn Drabløs
Pål Sætrom
机构：
[1] Norwegian University of Science and Technology,Department of Cancer Research and Molecular Medicine
[2] Norwegian University of Science and Technology,Department of Computer and Information Science
来源：
BMC Genomics | / 13卷
关键词：
Transcription Factor Binding Site; Support Vector Machine Model; Peak Region; Chromatin Accessibility; Peak Cluster;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [21] GTRD: a database of transcription factor binding sites identified by ChIP-seq experiments
    Yevshin, Ivan
    Sharipov, Ruslan
    Valeev, Tagir
    Kel, Alexander
    Kolpakov, Fedor
    NUCLEIC ACIDS RESEARCH, 2017, 45 (D1) : D61 - D67
  • [22] Optimized detection of transcription factor-binding sites in ChIP-seq experiments
    Elo, Laura L.
    Kallio, Aleksi
    Laajala, Teemu D.
    Hawkins, R. David
    Korpelainen, Eija
    Aittokallio, Tero
    NUCLEIC ACIDS RESEARCH, 2012, 40 (01)
  • [23] FROM BINDING MOTIFS IN CHIP-SEQ DATA TO IMPROVED MODELS OF TRANSCRIPTION FACTOR BINDING SITES
    Kulakovskiy, Ivan
    Levitsky, Victor
    Oshchepkov, Dmitry
    Bryzgalov, Leonid
    Vorontsov, Ilya
    JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 2013, 11 (01)
  • [24] Pseudocounts for transcription factor binding sites
    Nishida, Keishin
    Frith, Martin C.
    Nakai, Kenta
    NUCLEIC ACIDS RESEARCH, 2009, 37 (03) : 939 - 944
  • [25] Root stem cell homeostasis in Arabidopsis involves cell-type specific transcription factor complexes
    Strotmann, Vivien, I
    Garcia-Gomez, Monica L.
    Stahl, Yvonne
    EMBO REPORTS, 2025,
  • [26] Control of cell-type specific gene expression in Dictyostelium by the general transcription factor GBF
    Gollop, R
    Kimmel, AR
    DEVELOPMENT, 1997, 124 (17): : 3395 - 3405
  • [27] Transcription factor NF-κB activation by oxidative stress is cell-type dependent
    Gloire, G
    Habraken, Y
    Piette, J
    NAUNYN-SCHMIEDEBERGS ARCHIVES OF PHARMACOLOGY, 2003, 367 : R3 - R3
  • [28] Mutex: a method for simultaneous footprinting and determination of base pair specificity for transcription factor binding sites
    Denkinger, DJ
    Kawahara, RS
    ANALYTICAL BIOCHEMISTRY, 2003, 321 (01) : 142 - 145
  • [29] Identification of transcription factor binding sites from ChIP-seq data at high resolution
    Bardet, Anais F.
    Steinmann, Jonas
    Bafna, Sangeeta
    Knoblich, Juergen A.
    Zeitlinger, Julia
    Stark, Alexander
    BIOINFORMATICS, 2013, 29 (21) : 2705 - 2713
  • [30] A practical comparison of methods for detecting transcription factor binding sites in ChIP-seq experiments
    Laajala, Teemu D.
    Raghav, Sunil
    Tuomela, Soile
    Lahesmaa, Riitta
    Aittokallio, Tero
    Elo, Laura L.
    BMC GENOMICS, 2009, 10
12345