HiTIMED: hierarchical tumor immune microenvironment epigenetic deconvolution for accurate cell type resolution in the tumor microenvironment using tumor-type-specific DNA methylation data

被引:0
|
作者
Ze Zhang
John K. Wiencke
Karl T. Kelsey
Devin C. Koestler
Brock C. Christensen
Lucas A. Salas
机构
[1] Dartmouth College,Department of Epidemiology, Geisel School of Medicine
[2] University of California San Francisco,Department of Neurological Surgery
[3] University of California San Francisco,Institute for Human Genetics
[4] Brown University,Departments of Epidemiology and Pathology and Laboratory Medicine
[5] University of Kansas,Department of Biostatistics & Data Science, Medical Center
[6] Dartmouth College,Department of Molecular and Systems Biology, Geisel School of Medicine
[7] Dartmouth College,Department of Community and Family Medicine, Geisel School of Medicine
关键词
DNA methylation; Deconvolution; Tumor microenvironment; Epigenetics; Cancer; Immune microenvironment; Tumor angiogenesis;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [21] The interaction between DNA methylation and tumor immune microenvironment: from the laboratory to clinical applications
    Daoqi Zhu
    Siying Zeng
    Chao Su
    Jingjun Li
    Yiwen Xuan
    Yongkai Lin
    Enwu Xu
    Qin Fan
    Clinical Epigenetics, 16
  • [22] Neural-net-based cell deconvolution from DNA methylation reveals tumor microenvironment associated with cancer prognosis
    Yasumizu, Yoshiaki
    Hagiwara, Masaki
    Umezu, Yuto
    Fuji, Hiroaki
    Iwaisako, Keiko
    Asagiri, Masataka
    Uemoto, Shinji
    Nakamura, Yamami
    Thul, Sophia
    Ueyama, Azumi
    Yokoi, Kazunori
    Tanemura, Atsushi
    Nose, Yohei
    Saito, Takuro
    Wada, Hisashi
    Kakuda, Mamoru
    Kohara, Masaharu
    Nojima, Satoshi
    Morii, Eiichi
    Doki, Yuichiro
    Sakaguchi, Shimon
    Ohkura, Naganari
    NAR CANCER, 2024, 6 (02):
  • [23] Neural-net-based cell deconvolution from DNA methylation reveals tumor microenvironment associated with cancer prognosis
    Hagiwara, Masaki
    Yasumizu, Yoshiaki
    Iwaisako, Keiko
    Nakamura, Yamami
    Ueyama, Azumi
    Wada, Hisashi
    Sakaguchi, Shimon
    Ohkura, Naganari
    CANCER SCIENCE, 2025, 116 : 1061 - 1061
  • [24] Deconvolution of tumor composition using partially available DNA methylation data
    He, Dingqin
    Chen, Ming
    Wang, Wenjuan
    Song, Chunhui
    Qin, Yufang
    BMC BIOINFORMATICS, 2022, 23 (01)
  • [25] Deconvolution of tumor composition using partially available DNA methylation data
    Dingqin He
    Ming Chen
    Wenjuan Wang
    Chunhui Song
    Yufang Qin
    BMC Bioinformatics, 23
  • [26] Differential regulation of sunitinib targets predicts its tumor-type-specific effect on endothelial and/or tumor cell apoptosis
    Guilhem Bousquet
    Mariana Varna
    Irmine Ferreira
    Li Wang
    Pierre Mongiat-Artus
    Christophe Leboeuf
    Cédric de Bazelaire
    Sandrine Faivre
    Philippe Bertheau
    Eric Raymond
    Stéphane Germain
    Anne Janin
    Cancer Chemotherapy and Pharmacology, 2013, 72 : 1183 - 1193
  • [27] Differential regulation of sunitinib targets predicts its tumor-type-specific effect on endothelial and/or tumor cell apoptosis
    Bousquet, Guilhem
    Varna, Mariana
    Ferreira, Irmine
    Wang, Li
    Mongiat-Artus, Pierre
    Leboeuf, Christophe
    de Bazelaire, Cedric
    Faivre, Sandrine
    Bertheau, Philippe
    Raymond, Eric
    Germain, Stephane
    Janin, Anne
    CANCER CHEMOTHERAPY AND PHARMACOLOGY, 2013, 72 (06) : 1183 - 1193
  • [28] Tumor Cell Microenvironment and Microvessel Density Analysis in MALT Type Lymphoma
    Tamma, Roberto
    Ingravallo, Giuseppe
    Annese, Tiziana
    de Giorgis, Michela
    di Giovanni, Fabrizia
    Gaudio, Francesco
    Perrone, Tommasina
    Musto, Pellegrino
    Specchia, Giorgina
    Ribatti, Domenico
    ANTICANCER RESEARCH, 2021, 41 (03) : 1291 - 1297
  • [29] Cell-specific chemical libraries targeting immune supression in the tumor microenvironment
    Kischuk, Erin
    Majumder, Joydeb
    Fine, Jonathan
    Lantz, Travis
    Dhawan, Deepika
    Knapp, Deborah
    Ratliff, Timothy
    Chopra, Gaurav
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2018, 255
  • [30] Elucidating the cell type-specific mechanisms of the Ron receptor in the prostate tumor microenvironment.
    Sullivan, Camille
    Brown, Nicholas E.
    Waltz, Susan E.
    CANCER IMMUNOLOGY RESEARCH, 2020, 8 (04) : 69 - 70