Controlling the speed and trajectory of evolution with counterdiabatic driving

被引:0
|
作者
Shamreen Iram
Emily Dolson
Joshua Chiel
Julia Pelesko
Nikhil Krishnan
Özenç Güngör
Benjamin Kuznets-Speck
Sebastian Deffner
Efe Ilker
Jacob G. Scott
Michael Hinczewski
机构
[1] Case Western Reserve University,Department of Physics
[2] Translational Hematology Oncology Research,Department of Physics
[3] Cleveland Clinic,undefined
[4] Case Western Reserve University School of Medicine,undefined
[5] Biophysics Graduate Group,undefined
[6] University of California,undefined
[7] University of Maryland,undefined
[8] Baltimore County,undefined
[9] Physico-Chimie Curie UMR 168,undefined
[10] Institut Curie,undefined
[11] PSL Research University,undefined
来源
Nature Physics | 2021年 / 17卷
关键词
D O I
暂无
中图分类号
学科分类号
摘要
The pace and unpredictability of evolution are critically relevant in a variety of modern challenges, such as combating drug resistance in pathogens and cancer, understanding how species respond to environmental perturbations like climate change and developing artificial selection approaches for agriculture. Great progress has been made in quantitative modelling of evolution using fitness landscapes, allowing a degree of prediction for future evolutionary histories. Yet fine-grained control of the speed and distributions of these trajectories remains elusive. We propose an approach to achieve this using ideas originally developed in a completely different context—counterdiabatic driving to control the behaviour of quantum states for applications like quantum computing and manipulating ultracold atoms. Implementing these ideas for the first time in a biological context, we show how a set of external control parameters (that is, varying drug concentrations and types, temperature and nutrients) can guide the probability distribution of genotypes in a population along a specified path and time interval. This level of control, allowing empirical optimization of evolutionary speed and trajectories, has myriad potential applications, from enhancing adaptive therapies for diseases to the development of thermotolerant crops in preparation for climate change, to accelerating bioengineering methods built on evolutionary models, like directed evolution of biomolecules.
引用
收藏
页码:135 / 142
页数:7
相关论文
共 50 条
  • [31] Optimization of Speed Trajectory for Eco-driving Considering Road Characteristics
    Kim, Kyunghyun
    Lee, Heeyun
    Song, Changhee
    Kang, Changbeom
    Cha, Suk Won
    2018 IEEE VEHICLE POWER AND PROPULSION CONFERENCE (VPPC), 2018,
  • [32] XY-mixer ansatz assisted by counterdiabatic driving for combinational optimization
    Ruan, Yue
    Chen, Pengyue
    Li, Qi
    Yang, Ling
    Yuan, Zhiqiang
    Xue, Xiling
    Li, Xi
    Liu, Zhihao
    PHYSICAL REVIEW RESEARCH, 2025, 7 (01):
  • [33] Accelerated creation of NOON states with ultracold atoms via counterdiabatic driving
    Dengis, Simon
    Wimberger, Sandro
    Schlagheck, Peter
    PHYSICAL REVIEW A, 2025, 111 (03)
  • [34] Variational counterdiabatic driving of the Hubbard model for ground-state preparation
    Xie, Qing
    Seki, Kazuhiro
    Yunoki, Seiji
    PHYSICAL REVIEW B, 2022, 106 (15)
  • [35] Counterdiabatic driving in the classical ?-Fermi-Pasta-Ulam-Tsingou chain
    Gjonbalaj, Nik O.
    Campbell, David K.
    Polkovnikov, Anatoli
    PHYSICAL REVIEW E, 2022, 106 (01)
  • [36] A speed control race driver model with on-line driving trajectory planning
    Koh, Youngil
    Yi, Kyongsu
    Her, Hyundong
    Kim, Killsoo
    DYNAMICS OF VEHICLES ON ROADS AND TRACKS, 2016, : 67 - 76
  • [37] Experimental Realization of Shortcuts to Adiabaticity in a Nonintegrable Spin Chain by Local Counterdiabatic Driving
    Zhou, Hui
    Ji, Yunlan
    Nie, Xinfang
    Yang, Xiaodong
    Chen, Xi
    Bian, Ji
    Peng, Xinhua
    PHYSICAL REVIEW APPLIED, 2020, 13 (04):
  • [38] Counterdiabatic suppression of background state population in resonance leaking by controlling intermediate branching
    Etinski, M
    Uiberacker, C
    Jakubetz, W
    JOURNAL OF CHEMICAL PHYSICS, 2006, 124 (12):
  • [39] Shortcuts to adiabaticity by counterdiabatic driving for trapped-ion displacement in phase space
    An, Shuoming
    Lv, Dingshun
    del Campo, Adolfo
    Kim, Kihwan
    NATURE COMMUNICATIONS, 2016, 7
  • [40] Shortcuts to adiabaticity by counterdiabatic driving for trapped-ion displacement in phase space
    Shuoming An
    Dingshun Lv
    Adolfo del Campo
    Kihwan Kim
    Nature Communications, 7