Modeling enzyme-ligand binding in drug discovery

被引:0
|
作者
Janez Konc
Samo Lešnik
Dušanka Janežič
机构
[1] National Institute of Chemistry,Faculty of Mathematics, Natural Sciences and Information Technologies
[2] University of Primorska,undefined
关键词
Unknown protein fuctions; Off-target binding; Drug repositioning; Ligand 3D homolgy modeling; Induced-fit simulations; ProBiS-ligands web server;
D O I
暂无
中图分类号
学科分类号
摘要
Enzymes are one of the most important groups of drug targets, and identifying possible ligand-enzyme interactions is of major importance in many drug discovery processes. Novel computational methods have been developed that can apply the information from the increasing number of resolved and available ligand-enzyme complexes to model new unknown interactions and therefore contribute to answer open questions in the field of drug discovery like the identification of unknown protein functions, off-target binding, ligand 3D homology modeling and induced-fit simulations.
引用
收藏
相关论文
共 50 条
  • [41] Fluorescence decay heterogeneity model based on electron transfer processes in an enzyme-ligand complex
    Wlodarczyk, J
    Kierdaszuk, B
    ACTA PHYSICA POLONICA A, 2005, 107 (06) : 883 - 894
  • [42] The Added Value of Assessing Ligand-Receptor Binding Kinetics in Drug Discovery
    Guo, Dong
    Heitman, Laura H.
    Ijzerman, Adriaan P.
    ACS MEDICINAL CHEMISTRY LETTERS, 2016, 7 (09): : 819 - 821
  • [43] Data quality in drug discovery: the role of analytical performance in ligand binding assays
    Hermann Wätzig
    Imke Oltmann-Norden
    Franziska Steinicke
    Hassan A. Alhazmi
    Markus Nachbar
    Deia Abd El-Hady
    Hassan M. Albishri
    Knut Baumann
    Thomas Exner
    Frank M. Böckler
    Sami El Deeb
    Journal of Computer-Aided Molecular Design, 2015, 29 : 847 - 865
  • [44] Data quality in drug discovery: the role of analytical performance in ligand binding assays
    Waetzig, Hermann
    Oltmann-Norden, Imke
    Steinicke, Franziska
    Alhazmi, Hassan A.
    Nachbar, Markus
    Abd El-Hady, Deia
    Albishri, Hassan M.
    Baumann, Knut
    Exner, Thomas
    Boeckler, Frank M.
    El Deeb, Sami
    JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 2015, 29 (09) : 847 - 865
  • [45] Lipocalins in drug discovery: from natural ligand-binding proteins to 'anticalins'
    Schlehuber, S
    Skerra, A
    DRUG DISCOVERY TODAY, 2005, 10 (01) : 23 - 33
  • [46] Large-scale annotation of biochemically relevant pockets and tunnels in cognate enzyme-ligand complexes
    Vavra, O.
    Tyzack, J.
    Haddadi, F.
    Stourac, J.
    Damborsky, J.
    Mazurenko, S.
    Thornton, J. M.
    Bednar, D.
    JOURNAL OF CHEMINFORMATICS, 2024, 16 (01):
  • [47] INACTIVATION OF HUMAN GAMMA-GLUTAMYLCYSTEINE SYNTHETASE BY CYSTAMINE - DEMONSTRATION AND QUANTIFICATION OF ENZYME-LIGAND COMPLEXES
    LEBO, RV
    KREDICH, NM
    JOURNAL OF BIOLOGICAL CHEMISTRY, 1978, 253 (08) : 2615 - 2623
  • [48] Enzyme classification by ligand binding
    Izrailev, S
    Farnum, MA
    PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2004, 57 (04) : 711 - 724
  • [49] Enzyme inhibitors for drug discovery
    Patrick Meffre
    Zohra Benfodda
    Sébastien Albrecht
    Amino Acids, 2023, 55 : 1707 - 1708
  • [50] Enzyme inhibitors for drug discovery
    Meffre, Patrick
    Benfodda, Zohra
    Albrecht, Sebastien
    AMINO ACIDS, 2023, 55 (12) : 1707 - 1708