Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA

被引:0
|
作者
Nalini Polavarapu
Leonardo Mariño-Ramírez
David Landsman
John F McDonald
I King Jordan
机构
[1] Georgia Institute of Technology,School of Biology
[2] National Institutes of Health,National Center for Biotechnology Information
来源
关键词
Transcription Factor Binding Site; Phylogenetic Footprinting; Context Position; Genome Frequency; Relative Evolutionary Rate;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [21] Pseudocounts for transcription factor binding sites
    Nishida, Keishin
    Frith, Martin C.
    Nakai, Kenta
    NUCLEIC ACIDS RESEARCH, 2009, 37 (03) : 939 - 944
  • [22] An evolutionary approach for identifying potential transcription factor binding sites: the renin gene as an example
    Mrowka, R
    Steinhage, K
    Patzak, A
    Persson, PB
    AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY, 2003, 284 (04) : R1147 - R1150
  • [23] DNA methylation presents distinct binding sites for human transcription factors
    Hu, Shaohui
    Wan, Jun
    Su, Yijing
    Song, Qifeng
    Zeng, Yaxue
    Ha Nam Nguyen
    Shin, Jaehoon
    Cox, Eric
    Rho, Hee Sool
    Woodard, Crystal
    Xia, Shuli
    Liu, Shuang
    Lyu, Huibin
    Ming, Guo-Li
    Wade, Herschel
    Song, Hongjun
    Qian, Jiang
    Zhu, Heng
    ELIFE, 2013, 2
  • [24] Detecting functional modules of transcription factor binding sites in the human genome
    Manke, T
    Dieterich, C
    Vingron, M
    REGULATORY GENOMICS, 2005, 3318 : 14 - 21
  • [25] Nucleosome organization in the vicinity of transcription factor binding sites in the human genome
    Nie, Yumin
    Cheng, Xiangfei
    Chen, Jiao
    Sun, Xiao
    BMC GENOMICS, 2014, 15
  • [26] Nucleosome organization in the vicinity of transcription factor binding sites in the human genome
    Yumin Nie
    Xiangfei Cheng
    Jiao Chen
    Xiao Sun
    BMC Genomics, 15
  • [27] HOCOMOCO: a comprehensive collection of human transcription factor binding sites models
    Kulakovskiy, Ivan V.
    Medvedeva, Yulia A.
    Schaefer, Ulf
    Kasianov, Artem S.
    Vorontsov, Ilya E.
    Bajic, Vladimir B.
    Makeev, Vsevolod J.
    NUCLEIC ACIDS RESEARCH, 2013, 41 (D1) : D195 - D202
  • [28] Conserved transcription factor binding sites of cancer markers derived from primary lung adenocarcinoma microarrays
    Yap, YL
    Wong, MP
    Zhang, XW
    Hernandez, D
    Gras, R
    Smith, DK
    Danchin, A
    NUCLEIC ACIDS RESEARCH, 2005, 33 (01) : 409 - 421
  • [29] TFBSshape: a motif database for DNA shape features of transcription factor binding sites
    Yang, Lin
    Dror, Iris
    Zhou, Tianyin
    Mathelier, Anthony
    Wasserman, Wyeth W.
    Gordan, Raluca
    Rohs, Remo
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2015, 33 : 9 - 9
  • [30] Predicting Transcription Factor Binding Sites in DNA Sequences Without Prior Knowledge
    Lee, Wook
    Park, Byungkyu
    Choi, Daesik
    Lee, Chungkeun
    Chae, Hanju
    Han, Kyungsook
    INTELLIGENT COMPUTING THEORIES AND APPLICATION, ICIC 2016, PT I, 2016, 9771 : 386 - 391