Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA

被引：0
|
作者：
Nalini Polavarapu
Leonardo Mariño-Ramírez
David Landsman
John F McDonald
I King Jordan
机构：
[1] Georgia Institute of Technology,School of Biology
[2] National Institutes of Health,National Center for Biotechnology Information
来源：
BMC Genomics | / 9卷
关键词：
Transcription Factor Binding Site; Phylogenetic Footprinting; Context Position; Genome Frequency; Relative Evolutionary Rate;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [1] Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA
    Polavarapu, Nalini
    Marino-Ramirez, Leonardo
    Landsman, David
    McDonald, John F.
    Jordan, I. King
    BMC GENOMICS, 2008, 9 (1)
  • [2] Evolution of transcription factor DNA binding sites
    Kotelnikova, EA
    Makeev, VJ
    Gelfand, MS
    GENE, 2005, 347 (02) : 255 - 263
  • [3] DNA methylation patterns of transcription factor binding regions characterize their functional and evolutionary contexts
    Rimoldi, Martina
    Wang, Ning
    Zhang, Jilin
    Villar, Diego
    Odom, Duncan T.
    Taipale, Jussi
    Flicek, Paul
    Roller, Masa
    GENOME BIOLOGY, 2024, 25 (01):
  • [4] Evolutionary computation for discovery of composite transcription factor binding sites
    Fogel, Gary B.
    Porto, V. William
    Varga, Gabor
    Dow, Ernst R.
    Craven, Andrew M.
    Powers, David M.
    Harlow, Harry B.
    Su, Eric W.
    Onyia, Jude E.
    Su, Chen
    NUCLEIC ACIDS RESEARCH, 2008, 36 (21)
  • [5] rVISTA 2.0: evolutionary analysis of transcription factor binding sites
    Loots, GG
    Ovcharenko, I
    NUCLEIC ACIDS RESEARCH, 2004, 32 : W217 - W221
  • [6] Positional distribution of human transcription factor binding sites
    Koudritsky, Mark
    Domany, Eytan
    NUCLEIC ACIDS RESEARCH, 2008, 36 (21) : 6795 - 6805
  • [7] Predicting splicing patterns from the transcription factor binding sites in the promoter with deep learning
    Lin, Tzu-Chieh
    Tsai, Cheng-Hung
    Shiau, Cheng-Kai
    Huang, Jia-Hsin
    Tsai, Huai-Kuang
    BMC GENOMICS, 2024, 25 (SUPPL 3):
  • [8] The Patterns of Histone Modifications in the Vicinity of Transcription Factor Binding Sites in Human Lymphoblastoid Cell Lines
    Nie, Yumin
    Liu, Hongde
    Sun, Xiao
    PLOS ONE, 2013, 8 (03):
  • [9] Evolutionary dynamics of DNA-binding sites and direct target genes of a floral master regulatory transcription factor
    Muino, J. M.
    FEBS JOURNAL, 2015, 282 : 80 - 80
  • [10] Identification of transcription factor binding sites in the human genome sequence
    Samuel Levy
    Sridhar Hannenhalli
    Mammalian Genome, 2002, 13 : 510 - 514
12345