iREAD: a tool for intron retention detection from RNA-seq data

被引：0
|
作者：
Hong-Dong Li
Cory C. Funk
Nathan D. Price
机构：
[1] School of Computer Science and Engineering,Center for Bioinformatics
[2] Central South University,undefined
[3] Institute for Systems Biology,undefined
来源：
BMC Genomics | / 21卷
关键词：
Intron retention; RNA-seq; iREAD; Gene expression;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [41] A fast detection of fusion genes from paired-end RNA-seq data
    Trung Nghia Vu
    Deng, Wenjiang
    Quang Thinh Trac
    Calza, Stefano
    Hwang, Woochang
    Pawitan, Yudi
    BMC GENOMICS, 2018, 19
  • [42] Detection of condition-specific marker genes from RNA-seq data with MGFR
    El Amrani, Khadija
    Alanis-Lobato, Gregorio
    Mah, Nancy
    Kurtz, Andreas
    Andrade-Navarro, Miguel A.
    PEERJ, 2019, 7
  • [43] Unit-Free and Robust Detection of Differential Expression from RNA-Seq Data
    Jiang H.
    Zhan T.
    Statistics in Biosciences, 2017, 9 (1) : 178 - 199
  • [44] A fast detection of fusion genes from paired-end RNA-seq data
    Trung Nghia Vu
    Wenjiang Deng
    Quang Thinh Trac
    Stefano Calza
    Woochang Hwang
    Yudi Pawitan
    BMC Genomics, 19
  • [45] Detection of Alu Exonization Events in Human Frontal Cortex From RNA-Seq Data
    Florea, Liliana
    Payer, Lindsay
    Antonescu, Corina
    Yang, Guangyu
    Burns, Kathleen
    FRONTIERS IN MOLECULAR BIOSCIENCES, 2021, 8
  • [46] Dimensionality Reduction of RNA-Seq Data
    Al-Turaiki, Isra
    INTERNATIONAL JOURNAL OF COMPUTER SCIENCE AND NETWORK SECURITY, 2021, 21 (03): : 31 - 36
  • [47] Alt Event Finder: a tool for extracting alternative splicing events from RNA-seq data
    Zhou, Ao
    Breese, Marcus R.
    Hao, Yangyang
    Edenberg, Howard J.
    Li, Lang
    Skaar, Todd C.
    Liu, Yunlong
    BMC GENOMICS, 2012, 13
  • [48] JULiP: An efficient model for accurate intron selection from multiple RNA-seq samples
    Yang, Guangyu
    Florea, Liliana
    2016 IEEE 6TH INTERNATIONAL CONFERENCE ON COMPUTATIONAL ADVANCES IN BIO AND MEDICAL SCIENCES (ICCABS), 2016,
  • [49] JULiP: An efficient model for accurate intron selection from multiple RNA-seq samples
    Yang, Guangyu
    Florea, Liliana
    2016 IEEE 6TH INTERNATIONAL CONFERENCE ON COMPUTATIONAL ADVANCES IN BIO AND MEDICAL SCIENCES (ICCABS), 2016,
  • [50] FX: an RNA-Seq analysis tool on the cloud
    Hong, Dongwan
    Rhie, Arang
    Park, Sung-Soo
    Lee, Jongkeun
    Ju, Young Seok
    Kim, Sujung
    Yu, Saet-Byeol
    Bleazard, Thomas
    Park, Hyun-Seok
    Rhee, Hwanseok
    Chong, Hyonyong
    Yang, Kap-Seok
    Lee, Yeon-Su
    Kim, In-Hoo
    Lee, Jin Soo
    Kim, Jong-Il
    Seo, Jeong-Sun
    BIOINFORMATICS, 2012, 28 (05) : 721 - 723
12345