Cryptic transmission of SARS-CoV-2 and the first COVID-19 wave

被引:0
|
作者
Jessica T. Davis
Matteo Chinazzi
Nicola Perra
Kunpeng Mu
Ana Pastore y Piontti
Marco Ajelli
Natalie E. Dean
Corrado Gioannini
Maria Litvinova
Stefano Merler
Luca Rossi
Kaiyuan Sun
Xinyue Xiong
Ira M. Longini
M. Elizabeth Halloran
Cécile Viboud
Alessandro Vespignani
机构
[1] Northeastern University,Laboratory for the Modeling of Biological and Socio
[2] University of Greenwich,technical Systems
[3] Indiana University School of Public Health,Networks and Urban Systems Centre
[4] Emory University,Department of Epidemiology and Biostatistics
[5] ISI Foundation,Department of Biostatistics and Bioinformatics
[6] Bruno Kessler Foundation,Division of International Epidemiology and Population Studies, Fogarty International Center
[7] National Institutes of Health,Department of Biostatistics, College of Public Health and Health Professions
[8] University of Florida,Department of Biostatistics
[9] Vaccine and Infectious Disease Division,undefined
[10] Fred Hutchinson Cancer Research Center,undefined
[11] University of Washington,undefined
来源
Nature | 2021年 / 600卷
关键词
D O I
暂无
中图分类号
学科分类号
摘要
Considerable uncertainty surrounds the timeline of introductions and onsets of local transmission of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) globally1–7. Although a limited number of SARS-CoV-2 introductions were reported in January and February 2020 (refs.8,9), the narrowness of the initial testing criteria, combined with a slow growth in testing capacity and porous travel screening10, left many countries vulnerable to unmitigated, cryptic transmission. Here we use a global metapopulation epidemic model to provide a mechanistic understanding of the early dispersal of infections and the temporal windows of the introduction of SARS-CoV-2 and onset of local transmission in Europe and the USA. We find that community transmission of SARS-CoV-2 was likely to have been present in several areas of Europe and the USA by January 2020, and estimate that by early March, only 1 to 4 in 100 SARS-CoV-2 infections were detected by surveillance systems. The modelling results highlight international travel as the key driver of the introduction of SARS-CoV-2, with possible introductions and transmission events as early as December 2019 to January 2020. We find a heterogeneous geographic distribution of cumulative infection attack rates by 4 July 2020, ranging from 0.78% to 15.2% across US states and 0.19% to 13.2% in European countries. Our approach complements phylogenetic analyses and other surveillance approaches and provides insights that can be used to design innovative, model-driven surveillance systems that guide enhanced testing and response strategies.
引用
收藏
页码:127 / 132
页数:5
相关论文
共 50 条
  • [31] Evidences for a possible airborne transmission of SARS-CoV-2 in the COVID-19 crisis
    Gehanno, J. F.
    Bonneterre, V.
    Andujar, P.
    Pairon, J. C.
    Paris, C.
    Petit, A.
    Verdun-Esquer, C.
    Durand-Moreau, Q.
    Brochard, P.
    ARCHIVES DES MALADIES PROFESSIONNELLES ET DE L ENVIRONNEMENT, 2020, 81 (04) : 306 - 315
  • [32] COVID-19: gastrointestinal symptoms and potential sources of SARS-CoV-2 transmission
    Kotfis, Katarzyna
    Skonieczna-Zydecka, Karolina
    ANAESTHESIOLOGY INTENSIVE THERAPY, 2020, 52 (02) : 171 - 172
  • [33] Gastrointestinal involvement of COVID-19 and potential faecal transmission of SARS-CoV-2
    Song, Min
    Li, Zong-lin
    Zhou, Ye-jiang
    Tian, Gang
    Ye, Ting
    Zeng, Zhang-rui
    Deng, Jian
    Wan, Hong
    Li, Qing
    Liu, Jin-bo
    JOURNAL OF ZHEJIANG UNIVERSITY-SCIENCE B, 2020, 21 (09): : 749 - 751
  • [34] Particulate matter and SARS-CoV-2: A possible model of COVID-19 transmission
    Nguyen Thanh Tung
    Cheng, Po-Ching
    Chi, Kai-Hsien
    Hsiao, Ta-Chi
    Jones, Timothy
    BeruBe, Kelly
    Ho, Kin-Fai
    Chuang, Hsiao-Chi
    SCIENCE OF THE TOTAL ENVIRONMENT, 2021, 750
  • [35] Temporal trends of SARS-CoV-2 seroprevalence during the first wave of the COVID-19 epidemic in Kenya
    Adetifa, Ifedayo M. O.
    Uyoga, Sophie
    Gitonga, John N.
    Mugo, Daisy
    Otiende, Mark
    Nyagwange, James
    Karanja, Henry K.
    Tuju, James
    Wanjiku, Perpetual
    Aman, Rashid
    Mwangangi, Mercy
    Amoth, Patrick
    Kasera, Kadondi
    Ng'ang'a, Wangari
    Rombo, Charles
    Yegon, Christine
    Kithi, Khamisi
    Odhiambo, Elizabeth
    Rotich, Thomas
    Orgut, Irene
    Kihara, Sammy
    Bottomley, Christian
    Kagucia, Eunice W.
    Gallagher, Katherine E.
    Etyang, Anthony
    Voller, Shirine
    Lambe, Teresa
    Wright, Daniel
    Barasa, Edwine
    Tsofa, Benjamin
    Bejon, Philip
    Ochola-Oyier, Lynette, I
    Agweyu, Ambrose
    Scott, J. Anthony G.
    Warimwe, George M.
    NATURE COMMUNICATIONS, 2021, 12 (01)
  • [36] SARS-CoV-2 seroprevalence among blood donors after the first COVID-19 wave in Canada
    Saeed, Sahar
    Drews, Steven J.
    Pambrun, Chantale
    Yi, Qi-Long
    Osmond, Lori
    O'Brien, Sheila F.
    TRANSFUSION, 2021, 61 (03) : 862 - 872
  • [37] Temporal trends of SARS-CoV-2 seroprevalence during the first wave of the COVID-19 epidemic in Kenya
    Ifedayo M. O. Adetifa
    Sophie Uyoga
    John N. Gitonga
    Daisy Mugo
    Mark Otiende
    James Nyagwange
    Henry K. Karanja
    James Tuju
    Perpetual Wanjiku
    Rashid Aman
    Mercy Mwangangi
    Patrick Amoth
    Kadondi Kasera
    Wangari Ng’ang’a
    Charles Rombo
    Christine Yegon
    Khamisi Kithi
    Elizabeth Odhiambo
    Thomas Rotich
    Irene Orgut
    Sammy Kihara
    Christian Bottomley
    Eunice W. Kagucia
    Katherine E. Gallagher
    Anthony Etyang
    Shirine Voller
    Teresa Lambe
    Daniel Wright
    Edwine Barasa
    Benjamin Tsofa
    Philip Bejon
    Lynette I. Ochola-Oyier
    Ambrose Agweyu
    J. Anthony G. Scott
    George M. Warimwe
    Nature Communications, 12
  • [38] Higher entropy observed in SARS-CoV-2 genomes from the first COVID-19 wave in Pakistan
    Ghanchi, Najia Karim
    Nasir, Asghar
    Masood, Kiran Iqbal
    Abidi, Syed Hani
    Mahmood, Syed Faisal
    Kanji, Akbar
    Razzak, Safina
    Khan, Waqasuddin
    Shahid, Saba
    Yameen, Maliha
    Raza, Ali
    Ashraf, Javaria
    Ansar, Zeeshan
    Dharejo, Mohammad Buksh
    Islam, Nazneen
    Hasan, Zahra
    Hasan, Rumina
    PLOS ONE, 2021, 16 (08):
  • [39] Phylodynamic of SARS-CoV-2 during the second wave of COVID-19 in Peru
    Justo Arevalo, Santiago
    Uribe Calampa, Carmen Sofia
    Jimenez Silva, Cinthy
    Quinones Aguilar, Mauro
    Bouckaert, Remco
    Rebello Pinho, Joao Renato
    NATURE COMMUNICATIONS, 2023, 14 (01)
  • [40] Phylodynamic of SARS-CoV-2 during the second wave of COVID-19 in Peru
    Santiago Justo Arevalo
    Carmen Sofia Uribe Calampa
    Cinthy Jimenez Silva
    Mauro Quiñones Aguilar
    Remco Bouckaert
    Joao Renato Rebello Pinho
    Nature Communications, 14