Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays

被引:0
|
作者
Ashish Agarwal
David Koppstein
Joel Rozowsky
Andrea Sboner
Lukas Habegger
LaDeana W Hillier
Rajkumar Sasidharan
Valerie Reinke
Robert H Waterston
Mark Gerstein
机构
[1] Yale University,Department of Molecular Biophysics and Biochemistry
[2] Yale University,Program in Computational Biology and Bioinformatics
[3] University of Washington School of Medicine,Department of Genome Sciences
[4] Yale University School of Medicine,Department of Genetics
来源
BMC Genomics | / 11卷
关键词
Receiver Operating Characteristic Curve; False Positive Rate; Rank Score; Tiling Array; Massively Parallel Signature Sequencing;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [41] T-REx: Transcriptome analysis webserver for RNA-seq Expression data
    de Jong, Anne
    van der Meulen, Sjoerd
    Kuipers, Oscar P.
    Kok, Jan
    BMC GENOMICS, 2015, 16
  • [42] Phylogenomic Distance Method for Analyzing Transcriptome Evolution Based on RNA-seq Data
    Gu, Xun
    Zou, Yangyun
    Huang, Wei
    Shen, Libing
    Arendsee, Zebulun
    Su, Zhixi
    GENOME BIOLOGY AND EVOLUTION, 2013, 5 (09): : 1746 - 1753
  • [43] Clustering of RNA-Seq samples: Comparison study on cancer data
    Jaskowiak, Pablo Andretta
    Costa, Ivan G.
    Campello, Ricardo J. G. B.
    METHODS, 2018, 132 : 42 - 49
  • [44] Comparison of transformations for single-cell RNA-seq data
    Constantin Ahlmann-Eltze
    Wolfgang Huber
    Nature Methods, 2023, 20 : 665 - 672
  • [45] TACO produces robust multisample transcriptome assemblies from RNA-seq
    Niknafs Y.S.
    Pandian B.
    Iyer H.K.
    Chinnaiyan A.M.
    Iyer M.K.
    Nature Methods, 2017, 14 (1) : 68 - 70
  • [46] IsoTree: De Novo Transcriptome Assembly from RNA-Seq Reads
    Zhao, Jin
    Feng, Haodi
    Zhu, Daming
    Zhang, Chi
    Xu, Ying
    BIOINFORMATICS RESEARCH AND APPLICATIONS (ISBRA 2017), 2017, 10330 : 71 - 83
  • [47] TACO produces robust multisample transcriptome assemblies from RNA-seq
    Niknafs, Yashar S.
    Pandian, Balaji
    Iyer, Hariharan K.
    Chinnaiyan, Arul M.
    Iyer, Matthew K.
    NATURE METHODS, 2017, 14 (01) : 68 - 70
  • [48] StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
    Pertea, Mihaela
    Pertea, Geo M.
    Antonescu, Corina M.
    Chang, Tsung-Cheng
    Mendell, Joshua T.
    Salzberg, Steven L.
    NATURE BIOTECHNOLOGY, 2015, 33 (03) : 290 - +
  • [49] A comparison of methods for differential expression analysis of RNA-seq data
    Soneson, Charlotte
    Delorenzi, Mauro
    BMC BIOINFORMATICS, 2013, 14
  • [50] Comparison of transformations for single-cell RNA-seq data
    Ahlmann-Eltze, Constantin
    Huber, Wolfgang
    NATURE METHODS, 2023, 20 (05) : 665 - +