Interactive analysis and assessment of single-cell copy-number variations

被引：0
|
作者：
Tyler Garvin
Robert Aboukhalil
Jude Kendall
Timour Baslan
Gurinder S Atwal
James Hicks
Michael Wigler
Michael C Schatz
机构：
[1] Cold Spring Harbor Laboratory,Department of Molecular and Cellular Biology
[2] Stony Brook University,undefined
[3] Present address: Department of Cancer Biology and Genetics,undefined
[4] Memorial Sloan Kettering Cancer Center,undefined
[5] New York,undefined
[6] New York,undefined
[7] USA.,undefined
来源：
Nature Methods | 2015年 / 12卷
关键词：
D O I：
暂无
中图分类号：
学科分类号：
摘要：
Gingko is an open-source, flexible, comprehensive and user-friendly web tool for analysis of single-cell copy-number variations.
引用
收藏
页码：1058 / 1060
页数：2
相关论文
共 50 条
  • [31] Solutions for DNA Copy-Number Analysis
    Ott, Vanessa L.
    GENETIC ENGINEERING & BIOTECHNOLOGY NEWS, 2009, 29 (12): : 28 - 29
  • [32] Publisher Correction: Analysis of Copy-Number Variations and Feline Mammary Carcinoma Survival
    José Luis Granados-Soler
    Kirsten Bornemann-Kolatzki
    Julia Beck
    Bertram Brenig
    Ekkehard Schütz
    Daniela Betz
    Johannes Junginger
    Marion Hewicker-Trautwein
    Hugo Murua Escobar
    Ingo Nolte
    Scientific Reports, 10
  • [33] Microarray analysis of copy-number variations and gene expression profiles in prostate cancer
    Han, Yuping
    Jin, Xuefei
    Li, Hongyan
    Wang, Kaichen
    Gao, Ji
    Song, Lide
    Lv, Yanting
    MEDICINE, 2017, 96 (28)
  • [34] A single-cell solution for solid tumors to detect mutations and quantify copy number variations.
    Wu, Chi-Yun
    Hess, Paul R.
    Sathe, Anuja
    Rong, Jiazhen
    Lau, Billy T.
    Grimes, Susan M.
    Ji, Hanlee P.
    Zhang, Nancy R.
    CANCER RESEARCH, 2022, 82 (12)
  • [35] HiVA: a web platform for haplotyping and copy number analysis of single-cell genomes
    Ardeshirdavani, A.
    Esteki, M. Zamani
    Alcaide, D.
    Masset, H.
    Ding, J.
    Sifrim, A.
    Aerts, J.
    Voet, T.
    Moreau, Y.
    Vermeesch, J.
    EUROPEAN JOURNAL OF HUMAN GENETICS, 2019, 27 : 1703 - 1703
  • [36] Copy-number variations in hepatoblastoma associate with unique clinical features
    Jia-Feng Wu
    Chia-Huei Lee
    Huey-Ling Chen
    Yen-Hsuan Ni
    Hong-Yuan Hsu
    Jinn-Chyuan Sheu
    Daw-Jen Tsuei
    Mei-Hwei Chang
    Hepatology International, 2013, 7 : 208 - 214
  • [37] Copy-number variations in adult patients with chronic immune thrombocytopenia
    Yucesan, Emrah
    Ng, Ozden Hatirnaz
    Yalniz, Fevzi Firat
    Yilmaz, Hulya
    Salihoglu, Ayse
    Sudutan, Tugce
    Eskazan, Ahmet Emre
    Ongoren, Seniz
    Baslar, Zafer
    Soysal, Teoman
    Ozbek, Ugur
    Sayitoglu, Muge
    Ar, M. Cem
    EXPERT REVIEW OF HEMATOLOGY, 2020, 13 (11) : 1277 - 1287
  • [38] Copy-Number Variations in EYS: A Significant Event in the Appearance of arRP
    Pieras, Juan I.
    Barragan, Isabel
    Borrego, Salud
    Audo, Isabelle
    Gonzalez-Del Pozo, Maria
    Bernal, Sara
    Baiget, Montserrat
    Zeitz, Christina
    Bhattacharya, Shomi S.
    Antinolo, Guillermo
    INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE, 2011, 52 (08) : 5625 - 5631
  • [39] Comprehensive Genomic Analysis of Translocation Renal Cell Carcinoma Reveals Copy-Number Variations as Drivers of Disease Progression
    Marcon, Julian
    DiNatale, Renzo G.
    Sanchez, Alejandro
    Kotecha, Ritesh R.
    Gupta, Sounak
    Kuo, Fengshen
    Makarov, Vladimir
    Sandhu, Amar
    Mano, Roy
    Silagy, Andrew W.
    Blum, Kyle A.
    Nassau, Daniel E.
    Benfante, Nicole E.
    Ortiz, Michael, V
    Carlo, Maria, I
    Chan, Timothy A.
    Motzer, Robert J.
    Voss, Martin H.
    Coleman, Jonathan
    Russo, Paul
    Reuter, Victor
    Hakimi, A. Ari
    Reznik, Ed
    CLINICAL CANCER RESEARCH, 2020, 26 (14) : 3629 - 3640
  • [40] Copy-number variations in hepatoblastoma associate with unique clinical features
    Wu, Jia-Feng
    Lee, Chia-Huei
    Chen, Huey-Ling
    Ni, Yen-Hsuan
    Hsu, Hong-Yuan
    Sheu, Jinn-Chyuan
    Tsuei, Daw-Jen
    Chang, Mei-Hwei
    HEPATOLOGY INTERNATIONAL, 2013, 7 (01) : 208 - 214
12345