De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis

被引:0
|
作者
Polly M Fordyce
Doron Gerber
Danh Tran
Jiashun Zheng
Hao Li
Joseph L DeRisi
Stephen R Quake
机构
[1] University of California,Department of Biochemistry and Biophysics
[2] San Francisco,Department of Life Sciences
[3] Howard Hughes Medical Institute,Departments of Bioengineering and Applied Physics
[4] Bar Ilan University,undefined
[5] Stanford University,undefined
[6] Center for Theoretical Biology,undefined
[7] Peking University,undefined
来源
Nature Biotechnology | 2010年 / 28卷
关键词
D O I
暂无
中图分类号
学科分类号
摘要
Fordyce et al. measure the sequence specificity and affinity of DNA-binding proteins using an improved microfluidic device. They characterize binding of 28 yeast transcription factors, several of which had proved intractable to previous approaches.
引用
收藏
页码:970 / 975
页数:5
相关论文
共 50 条
  • [21] IDENTIFICATION OF TRANSCRIPTION FACTOR BINDING SITES IN PROMOTER DATABASES
    Durast, Ilknur Melis
    Dag, Ugur
    Gungor, Burcu Bakzr
    Erdogan, Burcu
    Kurnaz, Isil Aksan
    Sezerman, O. Ugur
    PROCEEDINGS OF THE 6TH INTERNATIONAL SYMPOSIUM ON HEALTH INFORMATICS AND BIOINFORMATICS (HIBIT'11), 2011, : 68 - 73
  • [22] PromoterSweep: a tool for identification of transcription factor binding sites
    Coral del Val
    Oliver Pelz
    Karl-Heinz Glatting
    Endre Barta
    Agnes Hotz-Wagenblatt
    Theoretical Chemistry Accounts, 2010, 125 : 583 - 591
  • [23] Application of alternative de novo motif recognition models for analysis of structural heterogeneity of transcription factor binding sites: a case study of FOXA2 binding sites
    Tsukanov, A., V
    Levitsky, V. G.
    Merkulova, T., I
    VAVILOVSKII ZHURNAL GENETIKI I SELEKTSII, 2021, 25 (01): : 7 - 17
  • [24] A Microfluidics-Based Platform For Identification and Detailed Characterization of Transcription Factor Binding Sites
    Fordyce, Polly M.
    Gerber, Doron
    Danh Tran
    Zheng, Jiashun
    Li, Hao
    Quake, Steven R.
    DeRisi, Joseph L.
    BIOPHYSICAL JOURNAL, 2010, 98 (03) : 70A - 70A
  • [25] Calcium binding affinity of de novo designed calcium binding sites in CD2
    Jones, LM
    Wei, Y
    Ye, YM
    Wilkins, A
    Liu, ZR
    Yang, JJ
    BIOPHYSICAL JOURNAL, 2003, 84 (02) : 176A - 176A
  • [26] IDENTIFICATION AND ANALYSIS OF DNA BINDING SPECIFIC TRANSCRIPTION FACTOR' BINDING SITES IN SUCROSE SYNTHASE PROMOTER
    Mubeen, Hira
    Masood, Ammara
    Wattoo, Javaid Iqbal
    Nasim, Ammara
    Raza, Shahid
    PAKISTAN JOURNAL OF BOTANY, 2019, 51 (04) : 1297 - 1302
  • [27] High-throughput SELEX-SAGE method for quantitative modeling of transcription-factor binding sites
    Roulet, E
    Busso, S
    Camargo, AA
    Simpson, AJG
    Mermod, N
    Bucher, P
    NATURE BIOTECHNOLOGY, 2002, 20 (08) : 831 - 835
  • [29] Nucleosomal Context of Binding Sites Influences Transcription Factor Binding Affinity and Gene Regulation
    Zhiming DaiXianhua DaiQian Xiangand Jihua Feng Electronic DepartmentSun YatSen UniversityGuangzhou China
    Genomics Proteomics & Bioinformatics, 2009, 7 (04) : 155 - 162
  • [30] COMPUTER-AIDED ANALYSIS OF POTENTIAL TRANSCRIPTION-FACTOR BINDING-SITES IN THE RABBIT BETA-CASEIN GENE PROMOTER
    MALEWSKI, T
    ZWIERZCHOWSKI, L
    BIOSYSTEMS, 1995, 36 (02) : 109 - 119