Morphological Stability for in silico Models of Avascular Tumors

被引:0
|
作者
Blom, Erik [1 ]
Engblom, Stefan [1 ]
机构
[1] Uppsala Univ, Dept Informat Technol, Div Sci Comp, S-75105 Uppsala, Sweden
关键词
Computational tumorigenesis; Cell population modeling; Emergent property; Darcy's law; Saffman-Taylor instability; CELL; CANCER; GROWTH; DERIVATION; HALLMARKS; DYNAMICS;
D O I
10.1007/s11538-024-01297-x
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
The landscape of computational modeling in cancer systems biology is diverse, offering a spectrum of models and frameworks, each with its own trade-offs and advantages. Ideally, models are meant to be useful in refining hypotheses, to sharpen experimental procedures and, in the longer run, even for applications in personalized medicine. One of the greatest challenges is to balance model realism and detail with experimental data to eventually produce useful data-driven models. We contribute to this quest by developing a transparent, highly parsimonious, first principle in silico model of a growing avascular tumor. We initially formulate the physiological considerations and the specific model within a stochastic cell-based framework. We next formulate a corresponding mean-field model using partial differential equations which is amenable to mathematical analysis. Despite a few notable differences between the two models, we are in this way able to successfully detail the impact of all parameters in the stability of the growth process and on the eventual tumor fate of the stochastic model. This facilitates the deduction of Bayesian priors for a given situation, but also provides important insights into the underlying mechanism of tumor growth and progression. Although the resulting model framework is relatively simple and transparent, it can still reproduce the full range of known emergent behavior. We identify a novel model instability arising from nutrient starvation and we also discuss additional insight concerning possible model additions and the effects of those. Thanks to the framework's flexibility, such additions can be readily included whenever the relevant data become available.
引用
收藏
页数:33
相关论文
共 50 条
  • [21] Morphological variants to predict outcome of avascular necrosis in developmental dysplasia of the hip
    Pullet, V
    Bonsel, J.
    Ganzeboom, B.
    Sakkers, R.
    Waarsing, E.
    BONE & JOINT JOURNAL, 2021, 103B (05): : 999 - 1004
  • [22] Avascular tumour growth models based on anomalous diffusion
    Sounak Sadhukhan
    S. K. Basu
    Journal of Biological Physics, 2020, 46 : 67 - 94
  • [23] Avascular tumour growth models based on anomalous diffusion
    Sadhukhan, Sounak
    Basu, S. K.
    JOURNAL OF BIOLOGICAL PHYSICS, 2020, 46 (01) : 67 - 94
  • [24] Cell-based models of avascular tumor growth
    Drasdo, D
    Dormann, S
    Hoehme, S
    Deutsch, A
    FUNCTION AND REGULATION OF CELLULAR SYSTEMS, 2004, : 367 - 378
  • [25] Front Instabilities and Invasiveness of Simulated 3D Avascular Tumors
    Poplawski, Nikodem J.
    Shirinifard, Abbas
    Agero, Ubirajara
    Gens, J. Scott
    Swat, Maciej
    Glazier, James A.
    PLOS ONE, 2010, 5 (05):
  • [26] MATHEMATICAL MODELING OF THE INTERPLAY BETWEEN STRESS AND ANISOTROPIC GROWTH OF AVASCULAR TUMORS
    Valdes-Ravelo, Fernando
    Ramirez-Torres, Ariel
    Rodriguez-Ramos, Reinaldo
    Bravo-Castillero, Julian
    Guinovart-Diaz, Raul
    Merodio, Jose
    Penta, Raimondo
    Conci, Aura
    Sabina, Federico J.
    Garcia-Reimbert, Catherine
    JOURNAL OF MECHANICS IN MEDICINE AND BIOLOGY, 2018, 18 (01)
  • [27] Morphological stability of nanostructures
    Murty, MVR
    PHYSICAL REVIEW B, 2000, 62 (24) : 17004 - 17011
  • [28] MORPHOLOGICAL STABILITY OF A CYLINDER
    CORIELL, SR
    HARDY, SC
    JOURNAL OF RESEARCH OF THE NATIONAL BUREAU OF STANDARDS SECTION A-PHYSICS AND CHEMISTRY, 1969, A 73 (01): : 65 - +
  • [29] In silico modeling of human malignant tumors' reprogramming
    Zia, M.
    Chaudhry, Q. A.
    TOXICOLOGY LETTERS, 2016, 258 : S97 - S97
  • [30] Morphological Characteristics of Normal Foveal Avascular Zone by Optical Coherence Tomography Angiography
    Eldaly, Zeiad
    Soliman, Wael
    Sharaf, Mohamed
    Reyad, Ali Natag
    JOURNAL OF OPHTHALMOLOGY, 2020, 2020