Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome

被引:0
|
作者
Derek M Bickhart
Benjamin D Rosen
Sergey Koren
Brian L Sayre
Alex R Hastie
Saki Chan
Joyce Lee
Ernest T Lam
Ivan Liachko
Shawn T Sullivan
Joshua N Burton
Heather J Huson
John C Nystrom
Christy M Kelley
Jana L Hutchison
Yang Zhou
Jiajie Sun
Alessandra Crisà
F Abel Ponce de León
John C Schwartz
John A Hammond
Geoffrey C Waldbieser
Steven G Schroeder
George E Liu
Maitreya J Dunham
Jay Shendure
Tad S Sonstegard
Adam M Phillippy
Curtis P Van Tassell
Timothy P L Smith
机构
[1] Cell Wall Biology and Utilization Laboratory,Department of Biology
[2] ARS USDA,Department of Genome Sciences
[3] Animal Genomics and Improvement Laboratory,Department of Animal Science
[4] ARS USDA,Department of Animal Science
[5] Genome Informatics Section,undefined
[6] Computational and Statistical Genomics Branch,undefined
[7] National Human Genome Research Institute,undefined
[8] Virginia State University,undefined
[9] BioNano Genomics,undefined
[10] University of Washington School of Medicine,undefined
[11] Phase Genomics,undefined
[12] Cornell University,undefined
[13] US Meat Animal Research Center,undefined
[14] ARS USDA,undefined
[15] Clay Center,undefined
[16] Shaanxi Key Laboratory of Agricultural Molecular Biology,undefined
[17] College of Animal Science and Technology,undefined
[18] Northwest A&F University,undefined
[19] South China Agricultural University,undefined
[20] Tianhe,undefined
[21] Guangzhou,undefined
[22] China.,undefined
[23] Consiglio per la Ricerca in Agricoltura e l'Analisi dell'Economia Agraria (CREA)–Animal Production Research Centre,undefined
[24] University of Minnesota,undefined
[25] Livestock Viral Diseases Programme,undefined
[26] The Pirbright Institute,undefined
[27] Warmwater Aquaculture Research Unit,undefined
[28] ARS USDA,undefined
[29] Howard Hughes Medical Institute,undefined
[30] Recombinetics,undefined
[31] Inc.,undefined
来源
Nature Genetics | 2017年 / 49卷
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中图分类号
学科分类号
摘要
Adam Phillippy, Curtis Van Tassell, Timothy Smith and colleagues present a new reference genome assembly for the domestic goat using a pipeline that improves contiguity of the assembly by more than 250-fold. The pipeline uses a combination of short- and long-read sequencing, optical mapping, and chromatin interaction mapping.
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页码:643 / 650
页数:7
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