Optimizing Gene Selection and Cancer Classification with Hybrid Sine Cosine and Cuckoo Search Algorithm

被引:27
|
作者
Yaqoob, Abrar [1 ]
Verma, Navneet Kumar [1 ]
Aziz, Rabia Musheer [1 ]
机构
[1] VIT Bhopal Univ, Sch Adv Sci & Languages, Sehore 466114, India
关键词
Cancer Classification; Sine Cosine Algorithm (SCA); Cuckoo Search Algorithm (CSA); Feature Selection (FS); Support Vector Machine (SVM); Minimum Redundancy Maximum Relevance (mRMR); PARTICLE SWARM OPTIMIZATION; MICROARRAY DATA; ANTICANCER PEPTIDES; COMBINATION; REDUCTION; MACHINE;
D O I
10.1007/s10916-023-02031-1
中图分类号
R19 [保健组织与事业(卫生事业管理)];
学科分类号
摘要
Gene expression datasets offer a wide range of information about various biological processes. However, it is difficult to find the important genes among the high-dimensional biological data due to the existence of redundant and unimportant ones. Numerous Feature Selection (FS) techniques have been created to get beyond this obstacle. Improving the efficacy and precision of FS methodologies is crucial in order to identify significant genes amongst complicated complex biological data. In this work, we present a novel approach to gene selection called the Sine Cosine and Cuckoo Search Algorithm (SCACSA). This hybrid method is designed to work with well-known machine learning classifiers Support Vector Machine (SVM). Using a dataset on breast cancer, the hybrid gene selection algorithm's performance is carefully assessed and compared to other feature selection methods. To improve the quality of the feature set, we use minimum Redundancy Maximum Relevance (mRMR) as a filtering strategy in the first step. The hybrid SCACSA method is then used to enhance and optimize the gene selection procedure. Lastly, we classify the dataset according to the chosen genes by using the SVM classifier. Given the pivotal role gene selection plays in unraveling complex biological datasets, SCACSA stands out as an invaluable tool for the classification of cancer datasets. The findings help medical practitioners make well-informed decisions about cancer diagnosis and provide them with a valuable tool for navigating the complex world of gene expression data.
引用
收藏
页数:18
相关论文
共 50 条
  • [31] Optimizing Neural Network Classification by Using the Cuckoo Algorithm
    Xue, Xiaojin
    Pan, Yun
    Jiang, Ruijuan
    Liu, Yilan
    2015 11TH INTERNATIONAL CONFERENCE ON NATURAL COMPUTATION (ICNC), 2015, : 24 - 30
  • [32] Thermal and Economical Optimization of a Shell and Tube Evaporator Using Hybrid Backtracking Search—Sine–Cosine Algorithm
    Oguz Emrah Turgut
    Arabian Journal for Science and Engineering, 2017, 42 : 2105 - 2123
  • [33] A Novel Hybrid Sine Cosine Algorithm and Pattern Search for Optimal Coordination of Power System Damping Controllers
    Eslami, Mahdiyeh
    Neshat, Mehdi
    Khalid, Saifulnizam Abd.
    SUSTAINABILITY, 2022, 14 (01)
  • [34] A hybrid Aquila Optimizer sine cosine Algorithm for Numerical Optimization
    Chu, Fei
    Wang, Jiayang
    Tian, Fulin
    2023 2ND ASIA CONFERENCE ON ALGORITHMS, COMPUTING AND MACHINE LEARNING, CACML 2023, 2023, : 258 - 263
  • [35] Interharmonics estimation using hybrid multi sine cosine algorithm
    Umadevi, A.
    Lakshminarasimman, L.
    INTERNATIONAL JOURNAL OF NONLINEAR ANALYSIS AND APPLICATIONS, 2022, 13 (02): : 619 - 629
  • [36] Hybrid Sine Cosine Algorithm for Solving Engineering Optimization Problems
    Brajevic, Ivona
    Stanimirovic, Predrag S.
    Li, Shuai
    Cao, Xinwei
    Khan, Ameer Tamoor
    Kazakovtsev, Lev A.
    MATHEMATICS, 2022, 10 (23)
  • [37] Cuckoo Search-Based Optimization for Cancer Classification: A New Hybrid Approach
    Aziz, Rabia Musheer
    JOURNAL OF COMPUTATIONAL BIOLOGY, 2022, 29 (06) : 565 - 584
  • [38] Feature selection based on dataset variance optimization using Hybrid Sine Cosine - Firehawk Algorithm (HSCFHA)
    Moosavi, Syed Kumayl Raza
    Saadat, Ahsan
    Abaid, Zainab
    Ni, Wei
    Li, Kai
    Guizani, Mohsen
    FUTURE GENERATION COMPUTER SYSTEMS-THE INTERNATIONAL JOURNAL OF ESCIENCE, 2024, 155 : 272 - 286
  • [39] Hybrid binary Sine Cosine Algorithm and Ant Lion Optimization (SCALO) approaches for feature selection problem
    Hans, Rahul
    Kaur, Harjot
    INTERNATIONAL JOURNAL OF COMPUTATIONAL MATERIALS SCIENCE AND ENGINEERING, 2020, 9 (01)
  • [40] Alternating sine cosine algorithm based on elite chaotic search strategy
    Guo W.-Y.
    Wang Y.
    Dai F.
    Liu T.
    Kongzhi yu Juece/Control and Decision, 2019, 34 (08): : 1654 - 1662