Association analyses identify 31 new risk loci for colorectal cancer susceptibility

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作者
Philip J. Law
Maria Timofeeva
Ceres Fernandez-Rozadilla
Peter Broderick
James Studd
Juan Fernandez-Tajes
Susan Farrington
Victoria Svinti
Claire Palles
Giulia Orlando
Amit Sud
Amy Holroyd
Steven Penegar
Evropi Theodoratou
Peter Vaughan-Shaw
Harry Campbell
Lina Zgaga
Caroline Hayward
Archie Campbell
Sarah Harris
Ian J. Deary
John Starr
Laura Gatcombe
Maria Pinna
Sarah Briggs
Lynn Martin
Emma Jaeger
Archana Sharma-Oates
James East
Simon Leedham
Roland Arnold
Elaine Johnstone
Haitao Wang
David Kerr
Rachel Kerr
Tim Maughan
Richard Kaplan
Nada Al-Tassan
Kimmo Palin
Ulrika A. Hänninen
Tatiana Cajuso
Tomas Tanskanen
Johanna Kondelin
Eevi Kaasinen
Antti-Pekka Sarin
Johan G. Eriksson
Harri Rissanen
Paul Knekt
Eero Pukkala
Pekka Jousilahti
机构
[1] The Institute of Cancer Research,Division of Genetics and Epidemiology
[2] University of Edinburgh,Colon Cancer Genetics Group, Medical Research Council Human Genetics Unit, Institute of Genetics and Molecular Medicine, Western General Hospital
[3] Instituto de Investigación de Santiago,Grupo de Medicina Xenómica, Fundación Pública Galega de Medicina Xenómica
[4] University of Birmingham,Cancer Genetics and Evolution Laboratory, Institute of Cancer and Genomic Sciences
[5] McCarthy Group,Wellcome Centre for Human Genetics
[6] University of Birmingham,Gastrointestinal Cancer Genetics Laboratory, Institute of Cancer and Genomic Sciences
[7] University of Edinburgh,Centre for Global Health Research, Usher Institute
[8] University of Dublin,Department of Public Health and Primary Care, Institute of Population Health, Trinity College Dublin
[9] University of Edinburgh,Medical Research Council Human Genetics Unit, Institute of Genetics and Molecular Medicine, Western General Hospital
[10] University of Edinburgh,Generation Scotland, Centre for Genomic and Experimental Medicine, MRC Institute of Genetics and Molecular Medicine
[11] University of Edinburgh,Centre for Cognitive Ageing and Cognitive Epidemiology
[12] University of Edinburgh,Department of Psychology
[13] University of Edinburgh,Medical Genetics Section, Centre for Genomics and Experimental Medicine, Institute of Genetics and Molecular Medicine
[14] University of Edinburgh,Alzheimer Scotland Dementia Research Centre
[15] University of Oxford,Translational Gastroenterology Unit, Nuffield Department. of Medicine
[16] John Radcliffe Hospital,Cancer Bioinfomatics Laboratory, Institute of Cancer and Genomic Sciences
[17] University of Birmingham,Department of Oncology
[18] University of Oxford,Nuffield Department of Clinical Laboratory Sciences, John Radcliffe Hospital
[19] University of Oxford,Department of Genetics
[20] Medical Research Council Clinical Trials Unit,Department of Medical and Clinical Genetics, Medicum and Genome
[21] King Faisal Specialist Hospital and Research Center,Scale Biology Research Program, Research Programs Unit
[22] University of Helsinki,Institute for Molecular Medicine Finland (FIMM)
[23] University of Helsinki,Unit of General Practice and Primary Health Care
[24] Folkhälsan Research Centre,Finnish Cancer Registry, Institute for Statistical and Epidemiological Cancer Research, Helsinki, Finland, and Faculty of Social Sciences
[25] University of Helsinki and Helsinki University Hospital,Faculty of Social Sciences
[26] National Institute for Health and Welfare,Department of Public Health
[27] University of Tampere,Analytic and Translational Genetics Unit, Department of Medicine
[28] University of Tampere,Department of Surgery, Abdominal Center
[29] University of Helsinki,Department of Pathology
[30] Broad Institute of MIT and Harvard,Department of Surgery
[31] Massachusetts General Hospital,Department of Health Sciences, Faculty of Sport and Health Sciences
[32] Helsinki University Hospital,Colorectal Oncogenomics Group, Department of Clinical Pathology
[33] Central Finland Central Hospital,Victorian Comprehensive Cancer Centre
[34] Jyväskylä Central Hospital,Genomic Medicine and Family Cancer Clinic
[35] University of Jyväskylä,Centre for Epidemiology and Biostatistics
[36] The University of Melbourne,Department of Health Sciences Research
[37] University of Melbourne,Cancer Prevention Program
[38] Centre for Cancer Research,Mount Sinai Hospital
[39] Royal Melbourne Hospital,Center for Public Health Genomics
[40] The University of Melbourne,Human Genomics Research Group, Department of Biomedicine
[41] Mayo Clinic,Department of Genomics, Life & Brain Center
[42] Fred Hutchinson Cancer Research Center,Institute of Human Genetics
[43] Lunenfeld-Tanenbaum Research Institute,Institute for Medical Informatics, Biometry and Epidemiology, University Hospital Essen
[44] Translational Genomics Research Institute (TGen),Centre for Cancer Genetic Epidemiology, Department of Oncology
[45] An Affiliate of City of Hope,Centre for Cancer Genetic Epidemiology, Department of Public Health and Primary Care
[46] University of Virginia,Department of Non
[47] University of Basel,Communicable Disease Epidemiology
[48] University of Bonn,Genomic Epidemiology Group
[49] University of Bonn School of Medicine & University Hospital Bonn,Division of Breast Cancer Research
[50] University of Duisburg-Essen,Division of Population Health, Health Services Research and Primary Care
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摘要
Colorectal cancer (CRC) is a leading cause of cancer-related death worldwide, and has a strong heritable basis. We report a genome-wide association analysis of 34,627 CRC cases and 71,379 controls of European ancestry that identifies SNPs at 31 new CRC risk loci. We also identify eight independent risk SNPs at the new and previously reported European CRC loci, and a further nine CRC SNPs at loci previously only identified in Asian populations. We use in situ promoter capture Hi-C (CHi-C), gene expression, and in silico annotation methods to identify likely target genes of CRC SNPs. Whilst these new SNP associations implicate target genes that are enriched for known CRC pathways such as Wnt and BMP, they also highlight novel pathways with no prior links to colorectal tumourigenesis. These findings provide further insight into CRC susceptibility and enhance the prospects of applying genetic risk scores to personalised screening and prevention.
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