IDTAXA: a novel approach for accurate taxonomic classification of microbiome sequences

被引：0
|
作者：
Adithya Murali
Aniruddha Bhargava
Erik S. Wright
机构：
[1] University of Wisconsin-Madison,Department of Computer Sciences
[2] University of Wisconsin-Madison,Department of Electrical and Computer Engineering
[3] University of Pittsburgh,Department of Biomedical Informatics, Pittsburgh Center for Evolutionary Biology and Medicine, School of Medicine
来源：
Microbiome | / 6卷
关键词：
Microbiome; 16S rRNA gene sequencing; ITS sequencing; Classification; Taxonomic assignment; Reference taxonomy;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [41] Rapid and accurate taxonomic classification of cpn60 amplicon sequence variants
    Ren, Qingyi
    Hill, Janet E.
    ISME COMMUNICATIONS, 2023, 3 (01):
  • [42] SpeciateIT and vSpeciateDB: novel, fast, and accurate per sequence 16S rRNA gene taxonomic classification of vaginal microbiota
    Holm, Johanna B.
    Gajer, Pawel
    Ravel, Jacques
    BMC BIOINFORMATICS, 2024, 25 (01):
  • [43] Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
    Adriaenssens, Evelien M. M.
    Roux, Simon
    Brister, J. Rodney
    Karsch-Mizrachi, Ilene
    Kuhn, Jens H. H.
    Varsani, Arvind
    Yigang, Tong
    Reyes, Alejandro
    Lood, Cedric
    Lefkowitz, Elliot J. J.
    Sullivan, Matthew B. B.
    Edwards, Robert A. A.
    Simmonds, Peter
    Rubino, Luisa
    Sabanadzovic, Sead
    Krupovic, Mart
    Dutilh, Bas E. E.
    NATURE BIOTECHNOLOGY, 2023, 41 (07) : 898 - 902
  • [44] Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
    Evelien M. Adriaenssens
    Simon Roux
    J. Rodney Brister
    Ilene Karsch-Mizrachi
    Jens H. Kuhn
    Arvind Varsani
    Tong Yigang
    Alejandro Reyes
    Cédric Lood
    Elliot J. Lefkowitz
    Matthew B. Sullivan
    Robert A. Edwards
    Peter Simmonds
    Luisa Rubino
    Sead Sabanadzovic
    Mart Krupovic
    Bas E. Dutilh
    Nature Biotechnology, 2023, 41 : 898 - 902
  • [45] TaxaHFE: a machine learning approach to collapse microbiome datasets using taxonomic structure
    Oliver, Andrew
    Kay, Matthew
    Lemay, Danielle G.
    BIOINFORMATICS ADVANCES, 2023, 3 (01):
  • [46] PAAM-ML: A novel Phylogeny and Abundance aware Machine Learning Modelling Approach for Microbiome Classification
    Wassan, Jyotsna Talreja
    Wang, Haiying
    Browne, Fiona
    Zheng, Huiru
    PROCEEDINGS 2018 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE (BIBM), 2018, : 44 - 49
  • [47] MLTreeMap - accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies
    Manuel Stark
    Simon A Berger
    Alexandros Stamatakis
    Christian von Mering
    BMC Genomics, 11
  • [48] MLTreeMap - accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies
    Stark, Manuel
    Berger, Simon A.
    Stamatakis, Alexandros
    von Mering, Christian
    BMC GENOMICS, 2010, 11
  • [49] A Novel Approach for Object Extraction from Video Sequences Based on Continuous Background/Foreground Classification
    Bellardi, Thiago C.
    Rios-Martinez, Jorge
    Vasquez, Dizan
    Laugier, Christian
    IEEE/RSJ 2010 INTERNATIONAL CONFERENCE ON INTELLIGENT ROBOTS AND SYSTEMS (IROS 2010), 2010,
  • [50] An Accurate SVM-Based Classification Approach for Hyperspectral Image Classification
    Baassou, Belkacem
    He, Mingyi
    Mei, Shaohui
    2013 21ST INTERNATIONAL CONFERENCE ON GEOINFORMATICS (GEOINFORMATICS), 2013,
12345