Enhancing fragment-based protein structure prediction by customising fragment cardinality according to local secondary structure

被引：0
|
作者：
Jad Abbass
Jean-Christophe Nebel
机构：
[1] Engineering and Computing,Faculty of Science
[2] Kingston University,Department of Computer Science
[3] Lebanese International University,undefined
来源：
BMC Bioinformatics | / 21卷
关键词：
Fragment-based protein structure prediction; Rosetta; Protein secondary structure;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [31] A new crystal structure fragment-based pharmacophore method for G protein-coupled receptors
    Fidom, Kimberley
    Isberg, Vignir
    Hauser, Alexander S.
    Mordalski, Stefan
    Lehto, Thomas
    Bojarski, Andrzej J.
    Gloriam, David E.
    METHODS, 2015, 71 : 104 - 112
  • [32] Structure and fragment-based design of novel nicotinamide phosphoribosyltransferase (NAMPT) inhibitors
    Dragovich, Peter S.
    Bair, Kenneth W.
    Baumeister, Timm
    Gunzner-Toste, Janet
    Ho, Yen-Ching
    Liang, Xiaorong
    Liederer, Bianca M.
    Ly, Justin
    O'Brien, Thomas
    Oeh, Jason
    Oh, Angela
    Sampath, Deepak
    Skelton, Nicholas
    Wang, Leslie
    Wang, Weiru
    Xiao, Yang
    Yuen, Po-wai
    Zak, Mark
    Zhao, Guiling
    Zheng, Xiaozhang
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2013, 246
  • [33] A Local Variant of the Conductor-Like Screening Model for Fragment-Based Electronic-Structure Methods
    Goez, Albrecht
    Neugebauer, Johannes
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2015, 11 (11) : 5277 - 5290
  • [34] Scalable, fragment-based ensemble generator for docking studies, structure prediction, and condensed-phase simulations
    Cerutti, David
    Zheng, Zheng
    Bansal, Nupur
    Merz, Kenneth
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2016, 251
  • [35] Protein structure prediction based on fragment assembly and the β-strand pairing energy function
    Lee, J
    Kim, SY
    Lee, J
    JOURNAL OF THE KOREAN PHYSICAL SOCIETY, 2005, 46 (03) : 707 - 712
  • [36] Trends in template/fragment-free protein structure prediction
    Yaoqi Zhou
    Yong Duan
    Yuedong Yang
    Eshel Faraggi
    Hongxing Lei
    Theoretical Chemistry Accounts, 2011, 128 : 3 - 16
  • [37] Trends in template/fragment-free protein structure prediction
    Zhou, Yaoqi
    Duan, Yong
    Yang, Yuedong
    Faraggi, Eshel
    Lei, Hongxing
    THEORETICAL CHEMISTRY ACCOUNTS, 2011, 128 (01) : 3 - 16
  • [38] Fragment-based drug discovery and protein-protein interactions
    Turnbull, Andrew P.
    Boyd, Susan M.
    Walse, Bjorn
    RESEARCH AND REPORTS IN BIOCHEMISTRY, 2014, 4 : 13 - 26
  • [39] From Protein Structure to Small-Molecules: Recent Advances and Applications to Fragment-Based Drug Discovery
    Ferreira, Leonardo G.
    Andricopulo, Adriano D.
    CURRENT TOPICS IN MEDICINAL CHEMISTRY, 2017, 17 (20) : 2260 - 2270
  • [40] Fragment-HMM: A new approach to protein structure prediction
    Li, Shuai Cheng
    Bu, Dongbo
    Xu, Jinbo
    Li, Ming
    PROTEIN SCIENCE, 2008, 17 (11) : 1925 - 1934
12345