Prediction of n-octanol–water partition coefficient of platinum (IV) complexes using correlation weights of fragments of local symmetry

被引:0
|
作者
Andrey A. Toropov
Alla P. Toropova
P. Ganga Raju Achary
机构
[1] Laboratory of Environmental Chemistry and Toxicology,Department of Chemistry, Institute of Technical Education and Research (ITER)
[2] Department of Environmental Health Science,undefined
[3] Istituto Di Ricerche Farmacologiche Mario Negri IRCCS,undefined
[4] Siksha‘O’Anusandhan University,undefined
来源
Structural Chemistry | 2023年 / 34卷
关键词
Platinum complex (IV); Fragment of Local Symmetry; logP prediction; QSPR; Monte Carlo method; CORAL software;
D O I
暂无
中图分类号
学科分类号
摘要
The octanol–water partition coefficient (logP) of platinum (IV) complexes is an essential indicator of the biological activity of coordination compounds in the aspect of potential application for drug design. The additive scheme of the logP simulation using a Simplified Molecular Input-Line Entry System (SMILES) was tested in a previous study. Here, it is proposed to take into account fragments of local symmetry (FLS) in SMILES. FLS are recognized as groups “xyx,” “xyyx,” and “xyzyx.” The CORAL software (www.insilico.eu/coral) generates optimal descriptors. The optimal descriptor is calculated using the so-called correlation weights for different SMILES fragments. Expanding the list of SMILES fragments by adding the aforementioned local symmetry markedly improves the predictive potential of models for the n-octanol–water partition coefficient of platinum (IV) coordination compounds (without FLS, the average determination coefficient for validation set is 0.87 ± 0.04, using FLS, the average becomes 0.91 ± 0.05). Thus, the involving fragments of local symmetry can improve the predictive potential of logP-models.
引用
收藏
页码:1517 / 1526
页数:9
相关论文
共 50 条
  • [31] iLOGP: A Simple, Robust, and Efficient Description of n-Octanol/Water Partition Coefficient for Drug Design Using the GB/SA Approach
    Daina, Antoine
    Michielin, Olivier
    Zoete, Vincent
    JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2014, 54 (12) : 3284 - 3301
  • [32] QSPR of n-Octanol/water Partition Coefficient (lgKow) for Alkyl(1-phenylsulfonyl) Cycloalkane-carboxylates
    翟志才
    柳红霞
    王遵尧
    赵林飞
    Chinese Journal of Structural Chemistry, 2009, (02) : 143 - 150
  • [33] QSPR of n-Octanol/water Partition Coefficient (IgKow) for Alkyl(1-phenylsulfonyl) Cycloalkane-carboxylates
    Zhai Zhi-Cai
    Liu Hong-Xia
    Wang Zun-Yao
    Zhao Lin-Fei
    CHINESE JOURNAL OF STRUCTURAL CHEMISTRY, 2009, 28 (02) : 143 - 150
  • [35] Application of TLSER method in predicting the aqueous solubility and n-octanol/water partition coefficient of PCBs, PCDDs and PCDFs
    Huang, J
    Yu, G
    Zhang, ZL
    Wang, YL
    Zhu, WH
    Wu, GS
    JOURNAL OF ENVIRONMENTAL SCIENCES, 2004, 16 (01) : 21 - 29
  • [36] Prediction of n-octanol/water partition coefficients of polychlorinated biphenyls by use of computer calculated molecular properties
    Makino, M
    CHEMOSPHERE, 1998, 37 (01) : 13 - 26
  • [37] Extreme learning machine models for predicting the n-octanol/water partition coefficient (Kow) data of organic compounds
    Kang, Xuejing
    Hu, Bo
    Perdana, Mayang Christy
    Zhao, Yongsheng
    Chen, Zhongbing
    JOURNAL OF ENVIRONMENTAL CHEMICAL ENGINEERING, 2022, 10 (06):
  • [38] QSPR modeling of octanol water partition coefficient of platinum complexes by InChI-based optimal descriptors
    Toropov, A. A.
    Toropova, A. P.
    Benfenati, E.
    JOURNAL OF MATHEMATICAL CHEMISTRY, 2009, 46 (04) : 1060 - 1073
  • [39] QSPR modeling of octanol water partition coefficient of platinum complexes by InChI-based optimal descriptors
    A. A. Toropov
    A. P. Toropova
    E. Benfenati
    Journal of Mathematical Chemistry, 2009, 46 : 1060 - 1073
  • [40] Prediction of n-octanol/water partition coefficients for polychlorinated dibenzo-p-dioxins using a general regression neural network
    Zheng, G
    Huang, WH
    Lu, XH
    ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 2003, 376 (05) : 680 - 685