Improving protein complex prediction by reconstructing a high-confidence protein-protein interaction network of Escherichia coli from different physical interaction data sources

被引:0
|
作者
Shirin Taghipour
Peyman Zarrineh
Mohammad Ganjtabesh
Abbas Nowzari-Dalini
机构
[1] University of Tehran,Department of Computer Science, School of Mathematics, Statistics, and Computer Science
来源
关键词
Protein-protein interaction networks; Protein complexes; Biological networks; Network clustering; Functional networks;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [31] Network Biomarkers Constructed from Gene Expression and Protein-Protein Interaction Data for Accurate Prediction of Leukemia
    Yuan, Xuye
    Chen, Jiajia
    Lin, Yuxin
    Li, Yin
    Xu, Lihua
    Chen, Luonan
    Hua, Haiying
    Shen, Bairong
    JOURNAL OF CANCER, 2017, 8 (02): : 278 - 286
  • [32] Global protein function prediction from protein-protein interaction networks
    Alexei Vazquez
    Alessandro Flammini
    Amos Maritan
    Alessandro Vespignani
    Nature Biotechnology, 2003, 21 : 697 - 700
  • [33] Global protein function prediction from protein-protein interaction networks
    Vazquez, A
    Flammini, A
    Maritan, A
    Vespignani, A
    NATURE BIOTECHNOLOGY, 2003, 21 (06) : 697 - 700
  • [34] Collective prediction of protein functions from protein-protein interaction networks
    Qingyao Wu
    Yunming Ye
    Michael K Ng
    Shen-Shyang Ho
    Ruichao Shi
    BMC Bioinformatics, 15
  • [35] Collective prediction of protein functions from protein-protein interaction networks
    Wu, Qingyao
    Ye, Yunming
    Ng, Michael K.
    Ho, Shen-Shyang
    Shi, Ruichao
    BMC BIOINFORMATICS, 2014, 15
  • [36] A novel link prediction algorithm for reconstructing protein-protein interaction networks by topological similarity
    Lei, Chengwei
    Ruan, Jianhua
    BIOINFORMATICS, 2013, 29 (03) : 355 - 364
  • [37] Review of multimer protein-protein interaction complex topology and structure prediction*
    Sun, Daiwen
    Liu, Shijie
    Gong, Xinqi
    CHINESE PHYSICS B, 2020, 29 (10)
  • [38] Enhancing Cancer Driver Gene Prediction by Protein-Protein Interaction Network
    Liu, Chuang
    Dai, Yao
    Yu, Keping
    Zhang, Zi-Ke
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2022, 19 (04) : 2231 - 2240
  • [39] Graph Neural Network for Protein-Protein Interaction Prediction: A Comparative Study
    Zhou, Hang
    Wang, Weikun
    Jin, Jiayun
    Zheng, Zengwei
    Zhou, Binbin
    MOLECULES, 2022, 27 (18):
  • [40] Structure-based prediction of protein-protein interaction network in rice
    Sun, Fangnan
    Deng, Yaxin
    Ma, Xiaosong
    Liu, Yuan
    Zhao, Lingxia
    Yu, Shunwu
    Zhang, Lida
    GENETICS AND MOLECULAR BIOLOGY, 2024, 47 (01)