TCC-GUI: a Shiny-based application for differential expression analysis of RNA-Seq count data

被引:0
|
作者
Wei Su
Jianqiang Sun
Kentaro Shimizu
Koji Kadota
机构
[1] The University of Tokyo,Graduate School of Agricultural and Life Sciences
[2] The University of Tokyo,Collaborative Research Institute for Innovative Microbiology
来源
关键词
RNA-Seq; Bioinformatics; Differential expression analysis; Shiny app;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [41] Robustness of differential gene expression analysis of RNA-seq
    Stupnikov, A.
    McInerney, C. E.
    Savage, K. I.
    McIntosh, S. A.
    Emmert-Streib, F.
    Kennedy, R.
    Salto-Tellez, M.
    Prise, K. M.
    McArt, D. G.
    COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2021, 19 : 3470 - 3481
  • [42] An iteration normalization and test method for differential expression analysis of RNA-seq data
    Yan Zhou
    Nan Lin
    Baoxue Zhang
    BioData Mining, 7
  • [43] Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data
    Franck Rapaport
    Raya Khanin
    Yupu Liang
    Mono Pirun
    Azra Krek
    Paul Zumbo
    Christopher E Mason
    Nicholas D Socci
    Doron Betel
    Genome Biology, 14
  • [44] rmRNAseq: differential expression analysis for repeated-measures RNA-seq data
    Nguyen, Yet
    Nettleton, Dan
    BIOINFORMATICS, 2020, 36 (16) : 4432 - 4439
  • [45] Measuring differential gene expression with RNA-seq: challenges and strategies for data analysis
    Finotello, Francesca
    Di Camillo, Barbara
    BRIEFINGS IN FUNCTIONAL GENOMICS, 2015, 14 (02) : 130 - 142
  • [46] contamDE: differential expression analysis of RNA-seq data for contaminated tumor samples
    Shen, Qi
    Hu, Jiyuan
    Jiang, Ning
    Hu, Xiaohua
    Luo, Zewei
    Zhang, Hong
    BIOINFORMATICS, 2016, 32 (05) : 705 - 712
  • [47] An iteration normalization and test method for differential expression analysis of RNA-seq data
    Zhou, Yan
    Lin, Nan
    Zhang, Baoxue
    BIODATA MINING, 2014, 7
  • [48] Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data
    Rapaport, Franck
    Khanin, Raya
    Liang, Yupu
    Pirun, Mono
    Krek, Azra
    Zumbo, Paul
    Mason, Christopher E.
    Socci, Nicholas D.
    Betel, Doron
    GENOME BIOLOGY, 2013, 14 (09):
  • [49] Network module-based model in the differential expression analysis for RNA-seq
    Lei, Mingli
    Xu, Jia
    Huang, Li-Ching
    Wang, Lily
    Li, Jing
    BIOINFORMATICS, 2017, 33 (17) : 2699 - 2705
  • [50] NPEBseq: nonparametric empirical bayesian-based procedure for differential expression analysis of RNA-seq data
    Bi, Yingtao
    Davuluri, Ramana V.
    BMC BIOINFORMATICS, 2013, 14