Topology independent protein structural alignment

被引：0
|
作者：
Joe Dundas
TA Binkowski
Bhaskar DasGupta
Jie Liang
机构：
[1] University of Illinois at Chicago,Department of Bioengineering
[2] University of Illinois at Chicago,Department of Computer Science
来源：
BMC Bioinformatics | / 8卷
关键词：
Similarity Score; Structural Alignment; Conflict Graph; Secondary Structure Content; Circular Permutation;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [41] Cross-phyla protein annotation by structural prediction and alignment
    Fabian Ruperti
    Nikolaos Papadopoulos
    Jacob M. Musser
    Milot Mirdita
    Martin Steinegger
    Detlev Arendt
    Genome Biology, 24
  • [42] MAFFT-DASH: integrated protein sequence and structural alignment
    Rozewicki, John
    Li, Songling
    Amada, Karlou Mar
    Standley, Daron M.
    Katoh, Kazutaka
    NUCLEIC ACIDS RESEARCH, 2019, 47 (W1) : W5 - W10
  • [43] An Integrated Approach to Sequence-Independent Local Alignment of Protein Binding Sites
    Pang, Bin
    Schlessman, David
    Kuang, Xingyan
    Zhao, Nan
    Shyu, Daniel
    Korkin, Dmitry
    Shyu, Chi-Ren
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2015, 12 (02) : 298 - 308
  • [44] Human Protein Structural Interaction Network: Domain Effects on Network Topology and Protein Function
    Chen Li-Na
    Wang Qian
    Shang Yu-Kui
    Zhang Liang-Cai
    Sun Zhao
    He Wei-Ming
    Zhao Yan
    Li Wan
    Wang Hong
    He Yue-Han
    Li Xia
    PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2010, 37 (05) : 517 - 526
  • [45] Subject-independent auditory spatial attention detection based on brain topology modeling and feature distribution alignment
    Niu, Yixiang
    Chen, Ning
    Zhu, Hongqing
    Li, Guangqiang
    Chen, Yibo
    HEARING RESEARCH, 2024, 453
  • [46] Independent continuous and mapping method of structural topology optimization based on global stress approach
    Sui Y.
    Peng X.
    Feng J.
    Ye H.
    Frontiers of Mechanical Engineering in China, 2010, 5 (2): : 130 - 142
  • [47] High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABERTOOTH
    Teichert, Florian
    Minning, Jonas
    Bastolla, Ugo
    Porto, Markus
    BMC BIOINFORMATICS, 2010, 11
  • [48] High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABERTOOTH
    Florian Teichert
    Jonas Minning
    Ugo Bastolla
    Markus Porto
    BMC Bioinformatics, 11
  • [49] TS-AMIR: a topology string alignment method for intensive rapid protein structure comparison
    Jafar Razmara
    Safaai Deris
    Sepideh Parvizpour
    Algorithms for Molecular Biology, 7
  • [50] TS-AMIR: a topology string alignment method for intensive rapid protein structure comparison
    Razmara, Jafar
    Deris, Safaai
    Parvizpour, Sepideh
    ALGORITHMS FOR MOLECULAR BIOLOGY, 2012, 7
12345