A tumor deconvolution DREAM Challenge: Inferring immune infiltration from bulk gene expression data

被引:2
|
作者
White, Brian S. [1 ]
Gentles, Andrew J. [2 ]
de Reynies, Aurelien [3 ]
Newman, Aaron M. [2 ]
Lamb, Andrew [1 ]
Heiser, Laura [4 ]
Waterfall, Joshua J. [5 ]
Yu, Thomas [1 ]
Guinney, Justin [1 ]
机构
[1] Sage Univ, Seattle, WA USA
[2] Stanford Univ, Stanford, CA 94305 USA
[3] Ligue Natl Contre Canc, Paris, France
[4] Oregon Hlth & Sci Inst, Portland, OR USA
[5] PSL Res Univ, Paris, France
关键词
D O I
10.1158/1538-7445.AM2019-1690
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
1690
引用
收藏
页数:2
相关论文
共 50 条
  • [11] Improved geometric deconvolution of bulk tumor genomic data
    Roman, Theodore
    Xie, Lu
    Schwartz, Russell
    CANCER RESEARCH, 2016, 76
  • [12] Automating deconvolution of heterogeneous bulk tumor genomic data
    Roman, Theodore
    Xiao, Brenda
    Schwartz, Russell
    CANCER RESEARCH, 2017, 77
  • [13] Inferring cancer metabolism from gene-expression data
    Vakul Mohanty
    Nature Reviews Cancer, 2024, 24 : 230 - 230
  • [14] Germline genetic polymorphisms influence tumor gene expression and immune cell infiltration
    Lim, Yoong Wearn
    Chen-Harris, Haiyin
    Mayba, Oleg
    Lianoglou, Steve
    Wuster, Arthur
    Bhangale, Tushar
    Khan, Zia
    Mariathasan, Sanjeev
    Daemen, Anneleen
    Reeder, Jens
    Haverty, Peter M.
    Forrest, William F.
    Brauer, Matthew
    Mellman, Ira
    Albert, Matthew L.
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2018, 115 (50) : E11701 - E11710
  • [15] Inferring cancer metabolism from gene-expression data
    Mohanty, Vakul
    NATURE REVIEWS CANCER, 2024, 24 (04) : 230 - 230
  • [16] Mining the gene expression matrix: Inferring gene relationships from large scale gene expression data
    D'haeseleer, P
    Wen, XL
    Fuhrman, S
    Somogyi, R
    INFORMATION PROCESSING IN CELLS AND TISSUES, 1998, : 203 - 212
  • [17] Improved cell composition deconvolution method of bulk gene expression profiles to quantify subsets of immune cells
    Yen-Jung Chiu
    Yi-Hsuan Hsieh
    Yen-Hua Huang
    BMC Medical Genomics, 12
  • [18] Improved cell composition deconvolution method of bulk gene expression profiles to quantify subsets of immune cells
    Chiu, Yen-Jung
    Hsieh, Yi-Hsuan
    Huang, Yen-Hua
    BMC MEDICAL GENOMICS, 2019, 12 (01)
  • [19] Bulk Tissue Gene Expression Deconvolution Using Single Cell RNA-Seq Data
    Wang, X.
    Li, M.
    Zhang, N.
    HUMAN HEREDITY, 2017, 83 (01) : 51 - 51
  • [20] Bayesian log-normal deconvolution for enhanced in silico microdissection of bulk gene expression data
    Bárbara Andrade Barbosa
    Saskia D. van Asten
    Ji Won Oh
    Arantza Farina-Sarasqueta
    Joanne Verheij
    Frederike Dijk
    Hanneke W. M. van Laarhoven
    Bauke Ylstra
    Juan J. Garcia Vallejo
    Mark A. van de Wiel
    Yongsoo Kim
    Nature Communications, 12