Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment

被引:66
|
作者
Fransen, Erik [1 ,2 ]
Bonneux, Sarah [1 ]
Corneveaux, Jason J. [3 ]
Schrauwen, Isabelle [1 ,2 ,3 ]
Di Berardino, Federica [4 ,5 ]
White, Cory H. [6 ]
Ohmen, Jeffrey D. [6 ]
Van de Heyning, Paul [7 ]
Ambrosetti, Umberto [4 ,5 ]
Huentelman, Matthew J. [3 ]
Van Camp, Guy [1 ]
Friedman, Rick A. [6 ]
机构
[1] Univ Antwerp, Ctr Med Genet, B-2610 Antwerp, Belgium
[2] Univ Antwerp, StatUa Ctr Stat, B-2610 Antwerp, Belgium
[3] Translat Genom Res Inst, Neurogen Div, Phoenix, AZ USA
[4] Univ Milan, Dept Clin Sci & Community Hlth, Audiol Unit, Milan, Italy
[5] Fdn IRCCS Ca Granda Osped Maggiore Policlin, Milan, Italy
[6] House Res Inst, Cell Biol & Genet Div, Los Angeles, CA USA
[7] Univ Antwerp Hosp, Dept Otolaryngol, Edegem, Belgium
关键词
HUMAN HEIGHT; EXPRESSION; PATHWAYS; LOCI;
D O I
10.1038/ejhg.2014.56
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We performed a genome-wide association study (GWAS) to identify the genes responsible for age-related hearing impairment (ARHI), the most common form of hearing impairment in the elderly. Analysis of common variants, with and without adjustment for stratification and environmental covariates, rare variants and interactions, as well as gene-set enrichment analysis, showed no variants with genome-wide significance. No evidence for replication of any previously reported genes was found. A study of the genetic architecture indicates for the first time that ARHI is highly polygenic in nature, with probably no major genes involved. The phenotype depends on the aggregated effect of a large number of SNPs, of which the individual effects are undetectable in a modestly powered GWAS. We estimated that 22% of the variance in our data set can be explained by the collective effect of all genotyped SNPs. A score analysis showed a modest enrichment in causative SNPs among the SNPs with a P-value below 0.01.
引用
收藏
页码:110 / 115
页数:6
相关论文
共 50 条
  • [41] Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study
    Lunetta, Kathryn L.
    D'Agostino, Ralph B., Sr.
    Karasik, David
    Benjamin, Emelia J.
    Guo, Chao-Yu
    Govindaraju, Raju
    Kiel, Douglas P.
    Kelly-Hayes, Margaret
    Massaro, Joseph M.
    Pencina, Michael J.
    Seshadri, Sudha
    Murabito, Joanne M.
    BMC MEDICAL GENETICS, 2007, 8
  • [42] Age-related late-onset disease heritability patterns and implications for genome-wide association studies
    Oliynyk, Roman Teo
    PEERJ, 2019, 7
  • [43] Genome-wide association study for response to ranibizumab therapy in 919 individuals with age-related macular degeneration
    Akiyama, Masato
    Takahashi, Atsushi
    Momozawa, Yukihide
    Arakawa, Satoshi
    Miya, Fuyuki
    Oshima, Yuji
    Yasuda, Miho
    Yoshida, Shigeo
    Yanagi, Yasuo
    Tanaka, Koji
    Ogura, Yuichiro
    Takahashi, Kanji
    Fujisawa, Kimihiko
    Kadonosono, Kazuaki
    Ishibashi, Tatsuro
    Sonoda, Koh-hei
    INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE, 2018, 59 (09)
  • [44] A Genome-Wide Association Study of Age-Related Cortical Cataract and Its Progression Identifies Novel Genes
    Jun, Gyungah
    Chung, Jaeyoon
    Igo, Robert P.
    Bailey-Wilson, Joan
    Stambolian, Dwight
    Cheng, Ching-Yu
    Mitchell, Paul
    Chew, Emily Y.
    Wang, Jie Jin
    Iyengar, Sudha K.
    INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE, 2015, 56 (07)
  • [45] Genome-Wide Association Studies: Getting to Pathogenesis, the Role of Inflammation/Complement in Age-Related Macular Degeneration
    Bailey, Jessica N. Cooke
    Pericak-Vance, Margaret A.
    Haines, Jonathan L.
    COLD SPRING HARBOR PERSPECTIVES IN MEDICINE, 2014, 4 (12):
  • [46] Genome-wide association analyses of genetic, phenotypic, and environmental risks in the age-related eye disease study
    Ryu, Euijung
    Fridley, Brooke L.
    Tosakulwong, Nirubol
    Bailey, Kent R.
    Edwards, Albert O.
    MOLECULAR VISION, 2010, 16 (301-02): : 2811 - 2821
  • [47] Incorporating prior knowledge to facilitate discoveries in a genome-wide association study on age-related macular degeneration
    Lin W.-Y.
    Lee W.-C.
    BMC Research Notes, 3 (1)
  • [48] Genes related to SNPs identified by Genome-wide association studies of age-related hearing loss show restriction to specific cell types in the adult mouse cochlea
    Xue, Na
    Song, Lei
    Song, Qiang
    Santos-Sacchi, Joseph
    Wu, Hao
    Navaratnam, Dhasakumar
    HEARING RESEARCH, 2021, 410
  • [49] Genome-wide DNA methylation analysis of middle-aged and elderly monozygotic twins with age-related hearing loss in Qingdao, China
    Guo, Longzi
    Wang, Weijing
    Song, Wanxue
    Cao, Hainan
    Tian, Huimin
    Wang, Zhaoguo
    Ren, Jifeng
    Ning, Feng
    Zhang, Dongfeng
    Duan, Haiping
    GENE, 2023, 849
  • [50] Association of Cognition and Age-Related Hearing Impairment in the English Longitudinal Study of Ageing
    Ray, Jaydip
    Popli, Gurleen
    Fell, Greg
    JAMA OTOLARYNGOLOGY-HEAD & NECK SURGERY, 2018, 144 (10) : 876 - 882