Novel insights into obesity and diabetes through genome-scale metabolic modeling

被引:38
|
作者
Varemo, Leif [1 ]
Nookaew, Intawat [1 ]
Nielsen, Jens [1 ]
机构
[1] Chalmers Univ Technol, Dept Chem & Biol Engn, SE-41296 Gothenburg, Sweden
来源
FRONTIERS IN PHYSIOLOGY | 2013年 / 4卷
关键词
systems biology; metabolism; obesity; diabetes; genome-scale metabolic models; metabolic networks; topology; constraint-based modeling; TISSUE GENE-EXPRESSION; NETWORK; RECONSTRUCTION; INTEGRATION; RESTRICTION; BIOMARKERS;
D O I
10.3389/fphys.2013.00092
中图分类号
Q4 [生理学];
学科分类号
071003 ;
摘要
The growing prevalence of metabolic diseases, such as obesity and diabetes, are putting a high strain on global healthcare systems as well as increasing the demand for efficient treatment strategies. More than 360 million people worldwide are suffering from type 2 diabetes (T2D) and, with the current trends, the projection is that 10% of the global adult population will be affected by 2030. In light of the systemic properties of metabolic diseases as well as the interconnected nature of metabolism, it is necessary to begin taking a holistic approach to study these diseases. Human genome-scale metabolic models (GEMs) are topological and mathematical representations of cell metabolism and have proven to be valuable tools in the area of systems biology. Successful applications of GEMs include the process of gaining further biological and mechanistic understanding of diseases, finding potential biomarkers, and identifying new drug targets. This review will focus on the modeling of human metabolism in the field of obesity and diabetes, showing its vast range of applications of clinical importance as well as point out future challenges.
引用
收藏
页数:7
相关论文
共 50 条
  • [21] Understanding the Causes and Implications of Endothelial Metabolic Variation in Cardiovascular Disease through Genome-Scale Metabolic Modeling
    McGarrity, Sarah
    Halldorsson, Haraldur
    Palsson, Sirus
    Johansson, Pr I.
    Rolfsson, Ottar
    FRONTIERS IN CARDIOVASCULAR MEDICINE, 2016, 3
  • [23] Genome-scale metabolic networks
    Terzer, Marco
    Maynard, Nathaniel D.
    Covert, Markus W.
    Stelling, Joerg
    WILEY INTERDISCIPLINARY REVIEWS-SYSTEMS BIOLOGY AND MEDICINE, 2009, 1 (03) : 285 - 297
  • [24] Genome-Scale Metabolic Modeling of Type 2 Diabetes Subtypes Elucidates Unique Metabolic Reactions and Flux Activity
    Smith, Kirk
    Eames, Alec
    Sevilla-Gonzalez, Magdalena
    Udler, Miriam
    DIABETES, 2024, 73
  • [25] Machine and deep learning meet genome-scale metabolic modeling
    Zampieri, Guido
    Vijayakumar, Supreeta
    Yaneske, Elisabeth
    Angione, Claudio
    PLOS COMPUTATIONAL BIOLOGY, 2019, 15 (07)
  • [26] Understanding Antimicrobial Resistance Using Genome-Scale Metabolic Modeling
    Alonso-Vasquez, Tania
    Fondi, Marco
    Perrin, Elena
    ANTIBIOTICS-BASEL, 2023, 12 (05):
  • [27] Genome-scale metabolic modeling of responses to polymyxins in Pseudomonas aeruginosa
    Zhu, Yan
    Czauderna, Tobias
    Zhao, Jinxin
    Klapperstueck, Matthias
    Maifiah, Mohd Hafidz Mahamad
    Han, Mei-Ling
    Lu, Jing
    Sommer, Bjoern
    Velkov, Tony
    Lithgow, Trevor
    Song, Jiangning
    Schreiber, Falk
    Li, Jian
    GIGASCIENCE, 2018, 7 (04):
  • [28] Modeling the metabolic dynamics at the genome-scale by optimized yield analysis
    Luo, Hao
    Li, Peishun
    Ji, Boyang
    Nielsen, Jens
    METABOLIC ENGINEERING, 2023, 75 : 119 - 130
  • [29] Emerging methods for genome-scale metabolic modeling of microbial communities
    Tarzi, Chaimaa
    Zampieri, Guido
    Sullivan, Neil
    Angione, Claudio
    TRENDS IN ENDOCRINOLOGY AND METABOLISM, 2024, 35 (06): : 533 - 548
  • [30] Genome-scale modeling forBacillus coagulansto understand the metabolic characteristics
    Chen, Yu
    Sun, Yan
    Liu, Zhihao
    Dong, Fengqing
    Li, Yuanyuan
    Wang, Yonghong
    BIOTECHNOLOGY AND BIOENGINEERING, 2020, 117 (11) : 3545 - 3558